Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020349.1 Corchorus olitorius cultivar O-4 contig20382, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47975

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12639--12666
3
9.3
3
100
0
56
32
0
0
67
0.91
12945--12971
14
1.9
14
100
0
54
29
7
25
37
1.83
12968--13003
2
18.0
2
100
0
72
50
0
0
50
1.00
13980--14036
26
2.1
27
87
9
82
14
21
10
54
1.69
15889--15963
28
2.7
27
74
13
64
38
13
22
25
1.90
17774--18043
130
2.0
131
87
6
380
49
1
10
38
1.47
29233--29262
14
2.1
14
100
0
60
13
13
36
36
1.84
29302--29401
31
3.2
31
80
2
112
20
19
26
35
1.96
30655--30698
22
2.0
22
100
0
88
18
27
13
40
1.88
30933--31028
42
2.3
42
83
3
131
14
47
9
28
1.75
33466--33651
91
2.0
91
84
4
241
34
12
14
38
1.84
35844--35880
19
1.9
19
88
0
56
16
32
13
37
1.87
35931--35988
19
2.9
19
82
5
62
31
18
12
37
1.88
36479--36525
3
15.7
3
100
0
94
65
34
0
0
0.93
36614--36751
69
2.0
71
88
7
210
45
3
26
23
1.69
36981--37054
30
2.4
31
88
2
105
35
18
14
31
1.92
38765--38805
20
2.0
20
85
0
55
19
12
21
46
1.82
43557--45777
334
6.8
318
74
11
1028
37
16
13
33
1.87
46953--47005
12
4.4
13
79
11
60
41
11
7
39
1.69
47178--47219
19
2.2
19
86
0
57
59
21
7
11
1.56

Tables:   1

The End!