Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020350.1 Corchorus olitorius cultivar O-4 contig20383, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3061
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31


Found at i:2326 original size:59 final size:59

Alignment explanation


    Indices: 2234--2348  Score: 221
    Period size: 59  Copynumber: 1.9  Consensus size: 59

       2224 ACAAACATTC

                                                                       
       2234 TTTGTTTTAGAGTGGTGCTTGATTAACTGATTGAATAAGGATATTAATATAATCAACTA
          1 TTTGTTTTAGAGTGGTGCTTGATTAACTGATTGAATAAGGATATTAATATAATCAACTA

                            *                                       
       2293 TTTGTTTTAGAGTGGTTCTTGATTAACTGATTGAATAAGGATATTAATATAATCAA
          1 TTTGTTTTAGAGTGGTGCTTGATTAACTGATTGAATAAGGATATTAATATAATCAA

       2349 TTATATAAGG


Statistics
Matches: 55,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  59   55  1.00

ACGTcount: A:0.34, C:0.06, G:0.18, T:0.42


Consensus pattern (59 bp):   
TTTGTTTTAGAGTGGTGCTTGATTAACTGATTGAATAAGGATATTAATATAATCAACTA
Done.