Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01020352.1 Corchorus olitorius cultivar O-4 contig20385, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 29653
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.34
Found at i:3867 original size:31 final size:31
Alignment explanation
Indices: 3832--3904 Score: 146
Period size: 31 Copynumber: 2.4 Consensus size: 31
3822 TATGTGATTG
3832 AGTGACCAAAATATTTAATATTACAAATATA
1 AGTGACCAAAATATTTAATATTACAAATATA
3863 AGTGACCAAAATATTTAATATTACAAATATA
1 AGTGACCAAAATATTTAATATTACAAATATA
3894 AGTGACCAAAA
1 AGTGACCAAAA
3905 CATTGCTTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.52, C:0.11, G:0.08, T:0.29
Consensus pattern (31 bp):
AGTGACCAAAATATTTAATATTACAAATATA
Found at i:5998 original size:152 final size:149
Alignment explanation
Indices: 5702--5993 Score: 507
Period size: 152 Copynumber: 2.0 Consensus size: 149
5692 TTTTATAATT
5702 GATTTACAATATCTTTCCATAATTAATAAATAAAAGTTTAATGACTAAAAAGAACACTAATTAAA
1 GATTTACAATATCTTTCCATAATTAATAAATAAAAGTTTAATGACTAAAAAGAACACTAATTAAA
5767 AAATTATTATGTAATAATACAAAGGGTATTTCTAAAATTTCCCAATTAAGATAAGATTTTTGGGT
66 AAATTATTATGTAATAATACAAAGGGTATTTCTAAAATTTCCCAATT---ATAAGATTTTTGGGT
5832 TCGTGATTTTATATAGTAGTAA
128 TCGTGATTTTATATAGTAGTAA
*
5854 GATTTATAATATCTTTCCATAATTAATAAATAAAAGTTTAATGACTAAAAAGAACACTAATTAAA
1 GATTTACAATATCTTTCCATAATTAATAAATAAAAGTTTAATGACTAAAAAGAACACTAATTAAA
* * *
5919 AAATTATTATGTAATAATACGAAGGGTATTTCTGAAATTTCCCAA-T-TAAGATTTTTGGGTTTG
66 AAATTATTATGTAATAATACAAAGGGTATTTCTAAAATTTCCCAATTATAAGATTTTTGGGTTCG
5982 TGATTTTATATA
131 TGATTTTATATA
5994 ATATAATAAA
Statistics
Matches: 136, Mismatches: 4, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
147 28 0.21
151 1 0.01
152 107 0.79
ACGTcount: A:0.42, C:0.08, G:0.11, T:0.38
Consensus pattern (149 bp):
GATTTACAATATCTTTCCATAATTAATAAATAAAAGTTTAATGACTAAAAAGAACACTAATTAAA
AAATTATTATGTAATAATACAAAGGGTATTTCTAAAATTTCCCAATTATAAGATTTTTGGGTTCG
TGATTTTATATAGTAGTAA
Found at i:6054 original size:9 final size:8
Alignment explanation
Indices: 6014--6055 Score: 66
Period size: 8 Copynumber: 5.1 Consensus size: 8
6004 TATAGTAAGA
6014 TAAGATAG
1 TAAGATAG
6022 TAAGATAG
1 TAAGATAG
*
6030 TAAAATAG
1 TAAGATAG
6038 TAAGATAG
1 TAAGATAG
6046 TATAGATAG
1 TA-AGATAG
6055 T
1 T
6056 TTAGAGAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
8 24 0.77
9 7 0.23
ACGTcount: A:0.50, C:0.00, G:0.21, T:0.29
Consensus pattern (8 bp):
TAAGATAG
Found at i:6060 original size:9 final size:9
Alignment explanation
Indices: 6016--6060 Score: 51
Period size: 8 Copynumber: 5.3 Consensus size: 9
6006 TAGTAAGATA
6016 AGATAGTA-
1 AGATAGTAT
6024 AGATAGTA-
1 AGATAGTAT
*
6032 AAATAGTA-
1 AGATAGTAT
6040 AGATAGTAT
1 AGATAGTAT
*
6049 AGATAGTTT
1 AGATAGTAT
6058 AGA
1 AGA
6061 GAATGATGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
8 22 0.67
9 11 0.33
ACGTcount: A:0.49, C:0.00, G:0.22, T:0.29
Consensus pattern (9 bp):
AGATAGTAT
Found at i:10399 original size:5 final size:5
Alignment explanation
Indices: 10389--10418 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
10379 AAAAAAGTCT
*
10389 TTTTC TTTTC TTTTC TTTTC TTTTT TTTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC
10419 AATAATTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTC
Found at i:14399 original size:14 final size:14
Alignment explanation
Indices: 14380--14406 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14370 TTAATGTTTT
14380 TATATATGTATATG
1 TATATATGTATATG
14394 TATATATGTATAT
1 TATATATGTATAT
14407 ATAAAATCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.52
Consensus pattern (14 bp):
TATATATGTATATG
Found at i:16415 original size:14 final size:13
Alignment explanation
Indices: 16398--16436 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
16388 AAAATTTAAA
16398 ATTTAAAAAATTT
1 ATTTAAAAAATTT
* *
16411 CATTTAAGAAATAT
1 -ATTTAAAAAATTT
16425 ATTTAAAAAATT
1 ATTTAAAAAATT
16437 CTAATATATA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
13 10 0.48
14 11 0.52
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (13 bp):
ATTTAAAAAATTT
Found at i:17481 original size:13 final size:13
Alignment explanation
Indices: 17465--17493 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
17455 TAAGGACTAA
17465 ATCACTATTATTT
1 ATCACTATTATTT
17478 ATCACTATTATTT
1 ATCACTATTATTT
17491 ATC
1 ATC
17494 TTGTTATGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.52
Consensus pattern (13 bp):
ATCACTATTATTT
Found at i:17837 original size:20 final size:20
Alignment explanation
Indices: 17800--17837 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
17790 TAAAAAAAAA
*
17800 TTCTTTTTATTCTTTATTGT
1 TTCTTTTTATTCTCTATTGT
17820 TTCTTTTTCATTC-CTATT
1 TTCTTTTT-ATTCTCTATT
17838 CTTCTTTCTG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.11, C:0.16, G:0.03, T:0.71
Consensus pattern (20 bp):
TTCTTTTTATTCTCTATTGT
Found at i:18797 original size:21 final size:21
Alignment explanation
Indices: 18773--18817 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
18763 TTAACGCCAA
*
18773 AAAATT-ATATTAAATAAATTT
1 AAAATTAACATTAAA-AAATTT
18794 AAAATTAAACATTAAAAAATTT
1 AAAATT-AACATTAAAAAATTT
18816 AA
1 AA
18818 GGCTAACCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 6 0.29
22 8 0.38
23 7 0.33
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (21 bp):
AAAATTAACATTAAAAAATTT
Found at i:19419 original size:23 final size:23
Alignment explanation
Indices: 19376--19419 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
19366 TAAGTTTTTT
*
19376 AATAAAATTAGTAAAATGATAAA
1 AATAAAATTAGTAAAAGGATAAA
*
19399 AATAAAA-TAGGTATAAGGATA
1 AATAAAATTA-GTAAAAGGATA
19420 TTAGATTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 16 0.89
ACGTcount: A:0.61, C:0.00, G:0.14, T:0.25
Consensus pattern (23 bp):
AATAAAATTAGTAAAAGGATAAA
Found at i:19451 original size:23 final size:26
Alignment explanation
Indices: 19425--19484 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 26
19415 GGATATTAGA
19425 TTTAATTAAATAAAA-ATAG-AGT-T
1 TTTAATTAAATAAAATATAGAAGTAT
* * *
19448 TTTAGTTGAGTAAAATTATAGAAGTAT
1 TTTAATTAAATAAAA-TATAGAAGTAT
19475 TTTAATTAAA
1 TTTAATTAAA
19485 ATAGTAAAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
23 12 0.44
25 4 0.15
26 3 0.11
27 8 0.30
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.42
Consensus pattern (26 bp):
TTTAATTAAATAAAATATAGAAGTAT
Found at i:19491 original size:102 final size:103
Alignment explanation
Indices: 19367--19572 Score: 319
Period size: 105 Copynumber: 2.0 Consensus size: 103
19357 TAATATATCT
*
19367 AAGTTTTTTAATAAAATTAGTAAAAT-GATAAAAATAAAATAG-GTATAAGGATATTAGATTTAA
1 AAGTATTTTAATAAAATTAGTAAAATAG-TAAAAATAAAATAGAGTATAAGGATATTAGATTTAA
* *
19430 TTAAATAAAAATAGAGTTTTTAGTTGAGTAAAATTATAG
65 TCAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTATAG
*
19469 AAGTATTTTAATTAAAA-TAGTAAAATAGTAAAAATAAAATAGTACTTATAAGGATATTAGATTT
1 AAGTATTTTAA-TAAAATTAGTAAAATAGTAAAAATAAAATAG-A-GTATAAGGATATTAGATTT
19533 AATCAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTATA
63 AATCAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTATA
19573 AAAATTTAAG
Statistics
Matches: 95, Mismatches: 4, Indels: 7
0.90 0.04 0.07
Matches are distributed among these distances:
102 33 0.35
103 6 0.06
105 56 0.59
ACGTcount: A:0.50, C:0.01, G:0.13, T:0.35
Consensus pattern (103 bp):
AAGTATTTTAATAAAATTAGTAAAATAGTAAAAATAAAATAGAGTATAAGGATATTAGATTTAAT
CAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTATAG
Found at i:19504 original size:9 final size:8
Alignment explanation
Indices: 19481--19512 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
19471 GTATTTTAAT
19481 TAAAATAG
1 TAAAATAG
19489 TAAAATAG
1 TAAAATAG
19497 TAAAA-A-
1 TAAAATAG
19503 TAAAATAG
1 TAAAATAG
19511 TA
1 TA
19513 CTTATAAGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
6 5 0.23
7 2 0.09
8 15 0.68
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.25
Consensus pattern (8 bp):
TAAAATAG
Found at i:20276 original size:25 final size:24
Alignment explanation
Indices: 20248--20309 Score: 72
Period size: 25 Copynumber: 2.6 Consensus size: 24
20238 GTGGATTGTA
*
20248 AAATAAATTGAATAATTAAGACATT
1 AAATAAATTCAATAATTAA-ACATT
* * *
20273 AAATAAATTTAAGAATTAAATATT
1 AAATAAATTCAATAATTAAACATT
20297 AAA-AAATTCAATA
1 AAATAAATTCAATA
20310 CTGACCCAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
23 8 0.25
24 7 0.22
25 17 0.53
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.32
Consensus pattern (24 bp):
AAATAAATTCAATAATTAAACATT
Found at i:23744 original size:23 final size:26
Alignment explanation
Indices: 23694--23745 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
23684 TGCTCTATTG
*
23694 AAAATAATTCAAACGGTGATTTCAAAA
1 AAAATAATTCAAACGGTGATAT-AAAA
23721 AAAATAATTCAAACGGT-A-ATAAAA
1 AAAATAATTCAAACGGTGATATAAAA
23745 A
1 A
23746 GATAAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 5 0.21
25 1 0.04
26 1 0.04
27 17 0.71
ACGTcount: A:0.58, C:0.10, G:0.10, T:0.23
Consensus pattern (26 bp):
AAAATAATTCAAACGGTGATATAAAA
Found at i:24798 original size:24 final size:21
Alignment explanation
Indices: 24739--24791 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
24729 TAAACTGTAA
*
24739 AAGCTTTTTTAGGAATCTCAT
1 AAGCTTTTTTAGTAATCTCAT
*
24760 AAGCATTTTTAGTAATCTCAT
1 AAGCTTTTTTAGTAATCTCAT
24781 AAGCCTTTTTT
1 AAG-CTTTTTT
24792 TTAGTAACTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 22 0.79
22 6 0.21
ACGTcount: A:0.28, C:0.15, G:0.11, T:0.45
Consensus pattern (21 bp):
AAGCTTTTTTAGTAATCTCAT
Found at i:26039 original size:3 final size:3
Alignment explanation
Indices: 26026--26072 Score: 78
Period size: 3 Copynumber: 16.0 Consensus size: 3
26016 ACTTCACTCA
*
26026 TAT TA- TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT AAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
26073 AATAATAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:26073 original size:6 final size:6
Alignment explanation
Indices: 26027--26105 Score: 61
Period size: 6 Copynumber: 13.3 Consensus size: 6
26017 CTTCACTCAT
* * * * *
26027 ATTAT- ATTATT ATTATT ATTATT ATTATT ATTATT ATTATA ATTATA
1 ATTATA ATTATA ATTATA ATTATA ATTATA ATTATA ATTATA ATTATA
* * * * *
26074 ATAATA ATAATA ATAATA ATAATA ATAATA AT
1 ATTATA ATTATA ATTATA ATTATA ATTATA AT
26106 AAAAGAATCA
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
5 5 0.07
6 66 0.93
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (6 bp):
ATTATA
Found at i:26077 original size:3 final size:3
Alignment explanation
Indices: 26065--26107 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
26055 TATTATTATT
*
26065 ATA ATT ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
26108 AAGAATCACC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:26435 original size:22 final size:22
Alignment explanation
Indices: 26401--26481 Score: 67
Period size: 22 Copynumber: 3.6 Consensus size: 22
26391 AAATGATGAG
* *
26401 GGTTGCTAGCAAAATTACAAAT
1 GGTTGTTATCAAAATTACAAAT
* *
26423 GGTTGTTACCAAAATTTTCAAAT
1 GGTTGTTATCAAAA-TTACAAAT
* *
26446 AG-TGTTTATAAAAATTACAAA-
1 GGTTG-TTATCAAAATTACAAAT
26467 GGATTGTTATCAAAA
1 GG-TTGTTATCAAAA
26482 CCTCGTAAGG
Statistics
Matches: 46, Mismatches: 9, Indels: 8
0.73 0.14 0.13
Matches are distributed among these distances:
21 1 0.02
22 28 0.61
23 17 0.37
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.33
Consensus pattern (22 bp):
GGTTGTTATCAAAATTACAAAT
Found at i:26481 original size:23 final size:23
Alignment explanation
Indices: 26411--26481 Score: 58
Period size: 23 Copynumber: 3.1 Consensus size: 23
26401 GGTTGCTAGC
*
26411 AAAATTACAAATGG-TTGTTACCA
1 AAAATTACAAA-GGATTGTTATCA
* * * *
26434 AAATTTTCAAA-TAGTGTTTAT-A
1 AAAATTACAAAGGATTG-TTATCA
26456 AAAATTACAAAGGATTGTTATCA
1 AAAATTACAAAGGATTGTTATCA
26479 AAA
1 AAA
26482 CCTCGTAAGG
Statistics
Matches: 35, Mismatches: 9, Indels: 8
0.67 0.17 0.15
Matches are distributed among these distances:
22 16 0.46
23 19 0.54
ACGTcount: A:0.46, C:0.08, G:0.11, T:0.34
Consensus pattern (23 bp):
AAAATTACAAAGGATTGTTATCA
Found at i:26592 original size:22 final size:21
Alignment explanation
Indices: 26561--26637 Score: 82
Period size: 22 Copynumber: 3.5 Consensus size: 21
26551 TCATAAGGGG
*
26561 TTATTAAAATTATATAGCGTCA
1 TTATCAAAATTATATAG-GTCA
* * **
26583 TTATCCAAATTACATATGGTGG
1 TTATCAAAATTATATA-GGTCA
26605 TTATCAAAATTATATAGGGTCA
1 TTATCAAAATTATATA-GGTCA
26627 TTATCAAAATT
1 TTATCAAAATT
26638 TTAATCGAGA
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
22 43 0.98
23 1 0.02
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TTATCAAAATTATATAGGTCA
Found at i:26593 original size:43 final size:44
Alignment explanation
Indices: 26544--26638 Score: 138
Period size: 44 Copynumber: 2.2 Consensus size: 44
26534 TGATAGTTAC
*
26544 CAAAATTTCATAAGG-GGTTATTAAAATTATATAGCGTCATTAT
1 CAAAATTTCATAAGGTGGTTATCAAAATTATATAGCGTCATTAT
* * * *
26587 CCAAATTACATATGGTGGTTATCAAAATTATATAGGGTCATTAT
1 CAAAATTTCATAAGGTGGTTATCAAAATTATATAGCGTCATTAT
26631 CAAAATTT
1 CAAAATTT
26639 TAATCGAGAT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
43 12 0.27
44 32 0.73
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.37
Consensus pattern (44 bp):
CAAAATTTCATAAGGTGGTTATCAAAATTATATAGCGTCATTAT
Found at i:26651 original size:65 final size:64
Alignment explanation
Indices: 26451--26683 Score: 184
Period size: 65 Copynumber: 3.6 Consensus size: 64
26441 CAAATAGTGT
* * ** * * *
26451 TTATAAAAATTACAAA-GGATTGTTATCAAAACCTCGTAAGGGGTATTTTTCAAAATTTTAATGG
1 TTATCAAAATTACAAATGG-TGGTTATCAAAATTTCATAA-GGG-A-TTATCAAAATTTTAATCG
26515 AGA
62 AGA
* * * * * * * **
26518 TTATCAAAATTACAAATGATAGTTACCAAAATTTCATAAGGGGTTATTAAAATTATATAGCGTCA
1 TTATCAAAATTACAAATGGTGGTTATCAAAATTTCATAAGGGATTATCAAAATTTTA-ATCGAGA
* *
26583 TTATCCAAATTACATATGGTGGTTATCAAAA-TT-ATATAGGGTCATTATCAAAATTTTAATCGA
1 TTATCAAAATTACAAATGGTGGTTATCAAAATTTCATA-AGGG--ATTATCAAAATTTTAATCGA
26646 GA
63 GA
* * *
26648 TTATCAAAATTACAAATAGCGGTTATTAAAATTTCA
1 TTATCAAAATTACAAATGGTGGTTATCAAAATTTCA
26684 AATGGTGGTT
Statistics
Matches: 128, Mismatches: 31, Indels: 14
0.74 0.18 0.08
Matches are distributed among these distances:
63 3 0.02
64 17 0.13
65 59 0.46
66 17 0.13
67 31 0.24
68 1 0.01
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.35
Consensus pattern (64 bp):
TTATCAAAATTACAAATGGTGGTTATCAAAATTTCATAAGGGATTATCAAAATTTTAATCGAGA
Found at i:26723 original size:22 final size:22
Alignment explanation
Indices: 26669--26723 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
26659 ACAAATAGCG
* * * *
26669 GTTATTAAAATTTCAAATGGTG
1 GTTATCAAAATTCCAAACGGTA
* *
26691 GTTTTCTAAATTCCAAACGGTA
1 GTTATCAAAATTCCAAACGGTA
26713 GTTATCAAAAT
1 GTTATCAAAAT
26724 CTCATAGGGC
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (22 bp):
GTTATCAAAATTCCAAACGGTA
Done.