Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020354.1 Corchorus olitorius cultivar O-4 contig20387, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111319

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1093--1122
2
15.0
2
100
0
60
0
0
50
50
1.00
1209--1249
20
2.0
20
100
0
82
34
19
14
31
1.92
4833--4897
26
2.9
21
73
20
67
47
20
3
29
1.65
9456--9549
45
2.2
44
86
7
131
37
20
7
35
1.81
11510--11564
26
2.0
28
93
6
96
47
16
3
32
1.64
12014--12058
9
5.3
9
76
15
51
0
24
0
75
0.80
13640--13699
28
2.1
28
90
6
95
48
3
10
38
1.53
13922--14139
109
2.0
109
94
1
384
44
15
10
30
1.80
16410--16548
69
2.0
68
97
2
262
38
15
14
31
1.88
23511--23642
67
2.0
67
85
4
178
49
12
11
27
1.74
23967--24043
15
4.6
16
80
15
68
42
0
0
57
0.99
23993--24049
9
6.0
9
82
11
51
42
0
0
57
0.98
24427--24574
71
2.0
74
84
10
196
39
16
16
27
1.90
42693--42750
24
2.3
24
85
5
71
48
5
0
46
1.24
42780--42813
9
3.9
9
84
7
52
50
0
0
50
1.00
42772--42829
14
4.2
15
72
28
65
50
0
0
50
1.00
42777--42814
17
2.2
18
95
4
69
47
0
0
52
1.00
42770--42828
23
2.7
22
78
19
70
47
0
0
52
1.00
42779--42829
23
2.4
23
87
12
74
49
0
0
50
1.00
43857--43898
2
21.0
2
80
9
50
45
4
2
47
1.36
44549--44598
26
1.9
26
84
8
66
40
8
2
50
1.43
46295--46411
57
2.1
57
95
0
207
35
16
6
41
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47267--47292
10
2.6
10
100
0
52
42
11
7
38
1.70
47507--47540
17
2.1
17
88
5
52
44
0
2
52
1.16
48855--48879
13
1.9
13
100
0
50
76
0
24
0
0.80
56526--56567
21
2.0
21
95
0
75
33
16
9
40
1.81
58611--58727
58
2.0
58
93
0
198
28
9
10
52
1.66
62454--62484
15
2.1
15
100
0
62
54
6
0
38
1.26
76793--76886
45
2.2
43
84
7
120
35
22
6
36
1.80
78758--78815
29
2.0
29
100
0
116
37
13
24
24
1.91
90025--90060
1
36.0
1
94
0
63
97
0
2
0
0.18
91863--91903
19
2.0
21
90
9
68
48
9
2
39
1.49
98097--98616
81
6.4
80
78
6
456
42
20
19
17
1.89
98112--98616
243
2.1
243
95
0
911
42
20
19
17
1.89
98199--98642
81
5.5
81
81
3
529
44
20
18
15
1.86
98112--98701
243
2.4
241
88
5
735
42
20
20
17
1.89
102554--102665
55
2.0
55
100
0
224
38
19
17
24
1.93
107101--107168
32
2.2
31
87
7
95
50
11
16
22
1.77
107298--107378
32
2.6
31
90
2
126
38
16
7
38
1.76
109364--109398
14
2.6
14
90
4
54
57
5
0
37
1.23
109706--109816
31
3.6
31
80
4
118
40
10
16
32
1.83
109946--110011
31
2.2
31
89
7
102
21
18
10
50
1.77

Tables:   1

The End!