Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020359.1 Corchorus olitorius cultivar O-4 contig20392, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84826

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2765--2851
30
2.9
30
83
6
122
51
4
2
41
1.35
3265--3322
22
2.7
21
78
5
62
37
17
6
37
1.76
3274--3335
21
2.9
21
83
7
63
32
16
8
43
1.77
4245--4316
35
2.1
35
83
0
90
36
36
1
26
1.65
11169--11200
12
2.6
13
90
9
50
9
0
6
84
0.78
13728--13764
19
2.0
19
89
5
58
64
0
0
35
0.94
13978--14053
31
2.5
31
88
0
107
35
15
17
31
1.91
18706--18739
6
5.8
6
86
6
52
82
0
17
0
0.67
22975--23070
35
2.7
35
93
0
174
22
16
19
40
1.91
23271--23305
18
1.9
18
94
0
61
28
8
11
51
1.67
23566--23760
41
4.6
43
81
8
231
21
8
27
43
1.80
23566--23760
84
2.3
84
95
1
347
21
8
27
43
1.80
24655--24689
16
2.2
16
89
0
52
37
2
40
20
1.67
26468--26544
29
2.6
30
83
6
102
31
27
11
29
1.92
26616--26653
12
3.2
12
85
7
51
5
15
21
57
1.57
26621--26661
12
3.5
12
83
9
50
7
12
21
58
1.58
26841--26911
29
2.4
30
83
7
90
33
8
26
30
1.86
32154--32246
45
2.1
45
93
0
159
36
22
4
36
1.74
33467--33522
29
1.9
29
89
7
87
26
14
19
39
1.90
37852--37903
26
2.0
26
92
0
86
28
7
30
32
1.85
37854--37901
14
3.6
14
75
11
55
31
8
29
31
1.87
45792--45842
22
2.3
23
80
6
61
21
27
25
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48320--48347
14
2.0
14
100
0
56
50
0
7
42
1.30
48321--48354
14
2.4
14
90
0
50
47
0
11
41
1.40
49398--49451
21
2.6
21
96
0
99
46
5
12
35
1.66
51390--51455
29
2.3
29
86
0
87
27
18
6
48
1.71
51898--52078
26
7.1
26
63
23
89
43
11
6
38
1.66
51996--52077
24
3.3
24
64
26
62
42
12
4
40
1.64
51898--52090
51
3.8
51
90
4
300
43
10
7
39
1.67
54065--54108
3
14.7
3
81
9
54
59
0
38
2
1.10
54063--54105
22
2.0
20
91
8
68
58
0
39
2
1.11
66821--66877
28
2.0
28
93
0
96
21
14
28
36
1.92
74255--74311
25
2.4
24
88
5
80
31
5
3
59
1.36
75428--75467
21
1.9
21
84
0
53
50
22
7
20
1.73
76703--76958
124
2.0
127
88
8
378
38
10
1
49
1.48
78459--78516
19
2.9
19
82
5
71
29
18
12
39
1.87

Tables:   1

The End!