genome.fa.s20366.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020366.1 Corchorus olitorius cultivar O-4 contig20399, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  169351

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4695--4856	60	2.7	60	86	1	227	35	17	20	25	1.95
4897--5062	31	5.5	28	67	16	84	27	18	18	36	1.94
4900--5060	60	2.7	59	86	5	216	26	18	17	37	1.93
6708--6737	2	15.0	2	100	0	60	50	0	0	50	1.00
8018--8051	16	2.1	16	100	0	68	61	11	0	26	1.30
9817--9857	21	1.9	22	85	5	57	43	29	17	9	1.80
10050--10116	31	2.1	32	84	13	86	37	26	19	16	1.93
16678--16728	22	2.3	22	83	12	61	37	17	31	13	1.89
20269--20299	16	1.9	16	93	0	53	70	0	22	6	1.09
22944--22988	10	4.4	10	78	15	56	31	20	8	40	1.83
23863--23963	45	2.2	45	96	0	184	35	29	14	19	1.92
26898--26939	22	1.9	22	85	0	57	40	26	19	14	1.89
28329--28557	127	1.8	127	87	1	345	49	1	11	37	1.48
32478--32521	21	2.1	21	100	0	88	18	13	31	36	1.90
35086--35120	18	1.9	18	94	0	61	54	8	5	31	1.54
45833--46001	92	1.8	93	91	3	279	50	2	13	34	1.54
53447--53472	2	13.0	2	100	0	52	50	0	0	50	1.00
56508--56611	54	1.9	55	84	9	142	25	7	13	53	1.65
65477--65532	24	2.3	25	84	6	71	50	26	21	1	1.59
66344--66374	10	3.1	10	95	0	53	0	12	0	87	0.55
68867--68919	11	5.2	10	78	17	56	41	1	18	37	1.62
68879--68914	19	1.9	18	88	5	54	41	0	22	36	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73592--73627	18	2.1	18	89	5	56	44	5	11	38	1.63
74719--74754	19	1.9	18	88	5	54	41	0	22	36	1.54
90420--90475	29	2.0	28	92	3	94	39	21	10	28	1.87
91845--92011	31	5.6	29	69	13	106	33	16	19	29	1.94
91850--92010	60	2.7	61	85	7	231	34	16	19	29	1.94
92054--92193	60	2.3	60	91	3	228	27	18	17	35	1.94
92084--92221	29	4.6	29	71	10	91	31	18	16	32	1.94
92054--92215	60	2.7	59	83	7	211	29	19	16	35	1.94
92053--92220	31	5.6	30	68	11	101	30	19	16	33	1.94
98505--98556	25	2.1	25	88	0	77	34	19	7	38	1.80
100460--100532	26	2.7	27	85	6	94	15	13	27	43	1.84
108712--108736	8	3.1	8	100	0	50	52	0	36	12	1.39
118997--119041	19	2.2	21	80	11	58	33	4	8	53	1.52
120705--120745	21	2.0	21	100	0	82	14	4	9	70	1.30
121839--121915	38	2.0	38	94	0	136	45	9	3	41	1.54
121899--121936	11	3.5	11	89	10	51	39	0	2	57	1.12
124488--124521	16	2.1	16	88	0	50	2	14	0	82	0.79
126197--126253	21	2.7	21	86	0	78	12	31	17	38	1.87
144150--144200	25	2.0	25	100	0	102	39	11	15	33	1.84
144313--144338	13	2.0	13	100	0	52	15	7	15	61	1.55
145416--145464	25	1.9	26	95	4	91	38	10	14	36	1.80
154496--154530	11	3.2	11	83	0	52	77	17	5	0	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167410--167448	12	2.9	15	71	28	50	53	5	5	35	1.45
167696--167720	3	8.3	3	100	0	50	0	64	0	36	0.94

Tables:   1

The End!