Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020368.1 Corchorus olitorius cultivar O-4 contig20401, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79278

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1042--1070
13
2.1
14
93
6
51
27
20
10
41
1.85
2984--3027
22
2.0
22
95
0
79
38
27
15
18
1.91
3768--4025
106
2.5
105
89
2
385
40
8
8
42
1.65
8443--8472
4
7.5
4
100
0
60
76
0
23
0
0.78
14144--14195
17
2.9
17
88
5
68
40
9
0
50
1.35
14161--14207
19
2.5
20
79
10
62
44
4
0
51
1.21
31319--31360
21
2.0
21
90
4
68
40
14
0
45
1.45
31778--31814
3
11.7
3
88
11
56
37
0
0
62
0.96
60583--60621
20
2.0
20
94
0
69
71
12
0
15
1.14
60718--60749
15
2.2
14
94
5
55
50
0
0
50
1.00
60867--60893
8
3.4
8
100
0
54
48
37
0
14
1.45
62454--62530
37
2.1
37
100
0
154
46
28
5
19
1.71
62513--62549
13
2.8
13
95
4
65
62
18
5
13
1.50
71257--71296
22
1.9
21
85
10
55
45
10
22
22
1.82
71336--71449
40
2.7
42
78
9
108
36
8
13
41
1.75
71547--71607
32
1.9
32
93
0
104
26
19
6
47
1.74
74426--74532
23
4.9
22
79
7
110
40
8
14
36
1.77
74544--74606
22
2.9
22
80
0
81
46
11
7
34
1.69

Tables:   1

The End!