Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020369.1 Corchorus olitorius cultivar O-4 contig20402, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128907

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--29
2
14.5
2
100
0
58
48
0
0
51
1.00
11385--11714
41
7.8
43
84
7
408
42
26
9
22
1.83
11385--11710
84
3.9
85
91
2
514
42
26
9
22
1.83
20497--20570
31
2.6
28
78
8
78
43
14
24
17
1.87
23545--23576
12
2.7
12
100
0
64
0
15
31
53
1.43
44008--44050
22
2.0
22
85
0
59
20
16
20
41
1.90
53412--53437
10
2.6
10
100
0
52
69
0
30
0
0.89
58977--59007
5
6.2
5
100
0
62
41
58
0
0
0.98
65379--65410
2
16.0
2
100
0
64
50
0
50
0
1.00
68237--68287
20
2.5
20
93
0
84
19
13
37
29
1.90
77489--77530
16
2.6
17
81
7
52
61
0
30
7
1.22
88036--88061
10
2.6
10
100
0
52
92
7
0
0
0.39
88033--88066
17
2.1
16
94
5
59
91
8
0
0
0.43
89326--89511
90
2.0
90
92
3
309
19
27
15
37
1.92
95001--95038
8
4.6
9
90
9
55
52
0
0
47
1.00
95003--95035
2
17.5
2
87
12
52
51
0
0
48
1.00
95458--95499
18
2.2
20
87
8
61
52
19
0
28
1.46
97839--97955
44
2.7
42
74
13
119
28
8
31
31
1.87
98451--98480
5
6.0
5
92
0
51
56
0
43
0
0.99
98706--98753
20
2.2
22
82
10
55
64
12
4
18
1.43
102708--102732
12
2.1
12
100
0
50
16
0
0
84
0.63
111895--111947
24
2.2
24
86
10
72
35
5
9
49
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112901--113007
53
2.0
53
94
0
187
32
8
13
45
1.73
113164--113297
61
2.2
61
95
1
241
55
5
8
29
1.54
115025--115163
70
2.0
69
98
1
269
27
11
24
36
1.90
119978--120074
46
2.0
47
92
5
160
40
18
12
28
1.87

Tables:   1

The End!