genome.fa.s20370.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020370.1 Corchorus olitorius cultivar O-4 contig20403, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122934

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11--52	22	1.9	22	95	0	75	9	14	9	66	1.44
3570--3629	30	2.0	30	100	0	120	40	3	23	33	1.71
5760--5837	39	2.0	39	92	0	129	28	21	28	21	1.99
12480--12527	22	2.1	23	92	3	80	58	0	18	22	1.39
12666--12702	19	1.9	19	94	0	65	40	13	16	29	1.86
13960--14002	20	2.2	19	83	4	50	37	6	6	48	1.57
16504--16562	27	2.1	28	96	3	111	20	3	44	32	1.68
23571--23609	17	2.3	17	86	0	51	71	10	0	17	1.12
25946--25972	2	13.5	2	100	0	54	51	0	0	48	1.00
27581--27606	13	2.0	13	100	0	52	23	30	7	38	1.83
37910--38033	44	3.1	44	72	24	153	34	18	8	38	1.80
37954--38016	33	1.9	33	96	0	117	31	23	4	39	1.76
39758--39820	31	2.1	31	90	3	101	53	4	7	33	1.51
42014--42067	21	2.7	19	79	20	58	59	0	3	37	1.15
42941--42986	23	2.0	23	95	0	83	30	23	21	23	1.99
48449--48506	19	2.9	20	87	5	82	29	20	12	37	1.89
55122--55218	45	2.2	45	83	1	115	37	5	18	39	1.73
56349--56499	80	1.9	79	83	12	195	30	19	5	43	1.75
57751--57775	13	1.9	13	100	0	50	60	0	0	40	0.97
60976--61076	31	3.5	31	65	15	88	26	17	16	38	1.92
62561--62626	25	2.6	25	95	0	114	30	13	15	40	1.85
62803--62861	29	2.0	29	96	0	109	49	8	13	28	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63399--63430	16	2.0	16	93	0	55	21	12	15	50	1.77
63684--63748	28	2.3	28	89	5	96	12	35	4	47	1.62
69544--69604	29	2.1	30	90	3	97	40	14	4	39	1.68
69693--69720	14	2.0	14	100	0	56	42	21	7	28	1.79
73672--73745	34	2.2	34	85	4	96	54	12	5	28	1.59
74453--74526	28	2.5	29	72	24	73	27	4	17	51	1.63
77207--77246	21	1.9	21	85	10	55	12	7	22	57	1.60
80473--80719	126	1.9	128	85	5	340	42	10	19	27	1.84
91499--91682	97	1.9	97	86	2	262	26	16	9	47	1.77
102516--102557	2	21.0	2	100	0	84	50	0	0	50	1.00
108234--108294	32	1.9	32	90	6	97	26	18	6	49	1.71
113962--113998	5	7.8	5	93	6	60	0	18	0	81	0.70
118838--118976	72	1.9	72	92	0	233	33	15	25	24	1.95

Tables:   1

The End!