Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020371.1 Corchorus olitorius cultivar O-4 contig20404, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63420

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
710--1263
277
2.0
277
97
0
1036
38
18
12
30
1.88
1336--1362
6
4.5
6
100
0
54
85
0
14
0
0.61
10023--10070
22
2.3
21
85
7
71
25
6
16
52
1.67
22521--22590
30
2.4
30
85
2
88
44
7
37
11
1.68
27877--28059
45
4.1
45
85
0
204
26
17
27
28
1.98
30439--30477
19
2.0
20
85
5
53
51
2
28
17
1.59
32370--32729
117
3.1
117
83
0
452
28
31
13
26
1.93
53111--53223
4
28.2
4
98
0
199
72
0
24
2
0.97
56743--56770
13
2.2
13
100
0
56
25
35
14
25
1.93
60486--60512
5
5.4
5
100
0
54
40
0
18
40
1.51
63209--63249
21
2.1
19
86
13
57
19
26
17
36
1.94

Tables:   1

The End!