Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020373.1 Corchorus olitorius cultivar O-4 contig20406, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78368

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2031--2073
16
2.7
16
85
0
59
27
25
11
34
1.91
5260--5330
29
2.4
31
81
6
85
22
21
7
49
1.73
7035--7112
29
2.7
29
85
2
111
15
24
17
42
1.88
7512--7560
25
2.0
25
100
0
98
51
4
4
40
1.40
27637--27667
13
2.5
13
94
5
55
87
0
12
0
0.55
29182--29235
9
6.0
9
76
8
56
40
0
5
53
1.24
29244--29276
16
2.0
17
88
5
50
51
0
6
42
1.26
30377--30842
208
2.2
209
95
1
864
33
16
12
37
1.86
31300--31324
12
2.1
12
100
0
50
40
0
8
52
1.31
32624--32805
91
2.0
91
85
0
247
15
34
19
30
1.93
44991--45022
15
2.1
15
94
0
55
25
21
18
34
1.96
49001--49050
20
2.4
22
86
6
68
8
32
16
44
1.76
69054--69163
32
3.3
32
74
20
127
14
8
30
46
1.74
69031--69171
67
2.1
67
98
0
273
14
7
28
50
1.68
69362--69388
14
1.9
14
100
0
54
7
25
22
44
1.79

Tables:   1

The End!