Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020375.1 Corchorus olitorius cultivar O-4 contig20408, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159064

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1930--1994
31
2.2
31
83
5
80
36
12
23
27
1.90
6430--6495
31
2.1
31
83
13
82
42
1
0
56
1.08
8971--8995
13
1.9
13
100
0
50
56
0
0
44
0.99
12562--12609
14
3.5
14
77
5
53
64
0
6
29
1.18
26487--26526
18
2.2
18
86
8
55
37
5
0
57
1.21
29723--29935
110
1.9
110
90
0
336
24
21
29
24
1.99
44919--44970
22
2.4
22
87
6
70
17
28
15
38
1.90
70089--70118
11
2.7
11
100
0
60
46
10
36
6
1.64
70120--70144
12
2.1
12
100
0
50
16
20
24
40
1.91
70968--71004
17
2.2
17
90
0
56
21
0
18
59
1.38
72593--72619
4
6.8
4
100
0
54
77
0
0
22
0.76
72618--72642
4
6.2
4
100
0
50
76
0
24
0
0.80
75394--75430
18
2.1
18
100
0
74
16
5
16
62
1.51
78977--79027
23
2.0
25
82
14
61
43
1
3
50
1.31
80750--80784
13
2.8
12
87
8
52
54
0
5
40
1.24
85051--85117
21
3.2
21
64
16
57
50
14
5
28
1.66
85038--85118
42
1.9
42
97
0
153
46
16
7
29
1.73
85184--85297
56
2.0
56
89
0
174
38
0
23
36
1.61
85483--85509
2
13.5
2
100
0
54
48
0
0
51
1.00
96013--96093
33
2.5
33
87
2
119
25
20
27
25
1.99
106776--106827
27
1.9
27
96
0
95
61
7
21
9
1.51
106776--106818
13
3.2
13
80
6
59
65
6
16
11
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109474--109597
43
2.8
44
78
9
119
39
16
8
35
1.79
109451--109597
65
2.2
66
83
3
172
38
17
8
34
1.81
109451--109621
22
7.8
22
72
7
107
38
19
9
33
1.84
109474--109636
87
1.9
88
81
1
202
38
17
8
34
1.81
109627--109679
22
2.4
22
78
6
54
35
7
9
47
1.64
109768--109801
17
2.0
17
100
0
68
23
11
23
41
1.87
113212--113236
12
2.1
12
100
0
50
20
0
16
64
1.30
115403--115450
23
2.1
23
84
3
62
37
2
4
56
1.30
116540--116595
11
5.0
11
75
12
60
78
16
3
1
0.97
120594--120646
21
2.5
21
93
0
88
9
33
45
11
1.72
120824--120858
14
2.5
14
90
0
52
2
14
0
82
0.77
137906--137945
20
2.1
19
85
4
53
57
0
7
35
1.27

Tables:   1

The End!