Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020376.1 Corchorus olitorius cultivar O-4 contig20409, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17509
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33


Found at i:5585 original size:15 final size:15

Alignment explanation


    Indices: 5567--5596  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       5557 TCATTCTTTA

                  *        
       5567 CTTTTTTTTCTTTTT
          1 CTTTTTCTTCTTTTT

                           
       5582 CTTTTTCTTCTTTTT
          1 CTTTTTCTTCTTTTT

       5597 TAAAATGCTT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83


Consensus pattern (15 bp):   
CTTTTTCTTCTTTTT
Done.