Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020377.1 Corchorus olitorius cultivar O-4 contig20410, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81964

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40--214
28
5.8
28
81
14
188
30
16
15
37
1.90
73--214
62
2.4
59
92
3
230
31
14
15
38
1.88
7703--7744
21
2.0
21
100
0
84
28
28
9
33
1.88
11793--11838
23
2.0
23
100
0
92
21
17
4
56
1.58
15053--15081
3
9.7
3
100
0
58
68
0
0
31
0.89
18104--18144
10
3.9
11
84
9
50
12
19
0
68
1.21
18524--18562
20
2.0
21
85
14
57
35
10
7
46
1.67
31804--31898
48
2.0
48
95
0
172
29
21
10
38
1.86
36294--36321
2
14.0
2
100
0
56
50
0
0
50
1.00
37347--37512
31
5.4
31
82
0
161
32
24
23
19
1.97
42658--45174
330
7.6
323
78
8
2042
36
15
13
34
1.87
45372--45489
60
2.0
60
88
6
181
35
22
3
38
1.71
45680--45796
59
2.0
56
90
4
180
34
22
2
41
1.67
45863--45943
42
1.9
42
97
0
153
29
7
16
46
1.73
49281--49318
11
3.5
11
89
10
51
39
0
2
57
1.12
50756--50832
29
2.5
31
89
6
122
29
12
27
29
1.94
50728--50832
31
3.5
31
81
7
126
33
13
25
27
1.93
72216--72276
31
2.0
31
86
0
86
9
16
8
65
1.45
72219--72285
31
2.1
32
83
5
82
11
14
8
64
1.50

Tables:   1

The End!