Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020382.1 Corchorus olitorius cultivar O-4 contig20415, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88516

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8625--8707
41
2.0
41
100
0
166
22
12
16
48
1.80
8704--9008
100
3.0
100
95
3
565
22
4
22
49
1.68
8967--9087
64
1.9
64
98
0
233
28
9
19
42
1.82
36962--36987
2
13.0
2
100
0
52
50
0
0
50
1.00
41434--41481
17
2.6
18
80
16
53
45
2
0
52
1.12
46335--46364
15
2.0
15
93
0
51
50
13
0
36
1.42
47415--47458
4
11.0
4
95
0
79
27
0
22
50
1.50
47514--47549
2
18.0
2
100
0
72
50
0
0
50
1.00
56847--56876
5
5.8
5
96
4
51
83
0
0
16
0.65
63760--63822
2
35.5
2
71
23
52
44
1
0
53
1.10
63755--63822
21
3.1
20
75
21
57
45
1
0
52
1.09
63760--63811
19
2.7
19
88
5
79
44
1
0
53
1.11
70125--70219
45
2.1
46
84
5
122
30
23
4
42
1.73
73836--73883
15
3.3
15
72
21
57
20
8
2
68
1.26
74276--74313
16
2.4
16
86
4
51
50
0
5
44
1.24
86284--86335
25
2.1
25
96
3
97
38
19
11
30
1.87

Tables:   1

The End!