Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020383.1 Corchorus olitorius cultivar O-4 contig20416, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58203

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2726--2787
12
5.2
12
73
11
56
43
1
1
53
1.20
2724--2802
19
3.8
20
76
19
72
45
1
1
51
1.17
2723--2805
33
2.6
34
78
16
95
45
2
1
50
1.22
4819--4882
14
4.9
14
80
18
84
32
0
67
0
0.91
4818--4885
23
3.0
23
93
4
111
33
0
66
0
0.92
7298--7369
34
2.1
34
100
0
144
51
11
16
20
1.75
13044--13089
11
3.9
12
83
10
51
60
0
2
36
1.09
13043--13100
29
2.0
30
86
3
82
60
0
3
36
1.14
13410--13451
20
2.2
20
95
4
77
38
2
0
59
1.10
15720--15749
13
2.4
12
94
5
51
40
0
0
60
0.97
16659--16718
21
2.8
21
71
19
52
60
3
3
33
1.30
17072--17164
45
2.1
45
87
0
132
37
22
5
34
1.77
22554--22583
15
1.9
16
93
6
53
43
0
3
53
1.17
22939--23863
336
2.8
332
84
3
1135
35
13
15
36
1.87
27517--27568
22
2.3
23
93
3
88
34
13
3
48
1.61
27559--27603
22
2.0
23
91
4
74
46
17
2
33
1.61
27564--27628
22
3.0
22
77
8
53
38
20
4
36
1.73
29115--29179
27
2.4
26
80
12
78
43
3
9
44
1.51
31130--31174
19
2.4
18
85
10
56
42
2
2
53
1.25
33026--33079
26
2.1
26
96
0
99
31
18
24
25
1.97
33191--33224
16
2.1
16
100
0
68
50
17
20
11
1.77
35006--35310
41
7.2
41
75
10
229
27
18
18
35
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34872--35269
173
2.3
172
92
1
643
28
17
17
35
1.93
35006--35395
214
1.8
213
92
0
663
29
18
16
35
1.93
38974--39029
16
3.0
20
65
20
57
57
10
10
21
1.63
38967--39037
36
2.0
35
94
2
124
57
11
11
19
1.63
42966--43094
62
2.1
61
89
4
197
44
16
22
16
1.86
46600--46708
54
2.0
54
87
3
157
17
21
24
36
1.94
48202--48294
44
2.2
44
84
9
122
39
19
6
34
1.77
54323--54375
26
2.1
25
89
3
79
41
9
5
43
1.61
54326--54381
26
2.2
26
83
6
69
41
8
8
41
1.68
57679--57704
2
13.0
2
100
0
52
50
0
0
50
1.00
57695--58190
200
2.5
203
94
3
885
36
11
8
44
1.71

Tables:   1

The End!