Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020387.1 Corchorus olitorius cultivar O-4 contig20420, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33916

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1175--1217
2
21.5
2
100
0
86
48
0
0
51
1.00
1390--1508
57
2.1
58
91
1
195
32
22
2
42
1.67
1574--1654
42
1.9
42
97
0
153
29
7
16
46
1.73
2612--2641
2
15.0
2
100
0
60
50
0
0
50
1.00
10619--10656
2
19.0
2
100
0
76
50
0
0
50
1.00
11265--14340
325
9.4
327
75
10
2068
33
14
14
36
1.87
17360--17434
28
2.7
27
74
11
80
38
16
22
22
1.92
20279--20553
141
1.9
142
85
2
374
35
10
12
41
1.77
20401--20888
172
2.9
168
86
4
667
34
10
11
43
1.75
20905--21262
141
2.5
140
85
2
502
33
11
9
44
1.74
21107--21437
173
1.9
172
88
4
497
35
12
8
43
1.74
28351--28433
22
3.8
21
73
17
64
57
1
2
38
1.19
28353--28401
25
2.0
25
84
8
64
59
0
0
40
0.98
29472--29513
18
2.3
19
80
12
52
35
9
30
23
1.87
30784--30836
18
2.9
18
75
11
54
33
11
26
28
1.91

Tables:   1

The End!