Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020388.1 Corchorus olitorius cultivar O-4 contig20421, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77775

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2723--2831
31
3.5
31
84
1
137
33
23
21
21
1.97
4704--4957
132
1.9
130
90
4
404
31
14
22
31
1.93
10472--10520
26
1.9
25
100
0
89
51
26
2
20
1.59
12085--12122
19
2.0
19
94
0
67
23
21
18
36
1.95
26935--27108
42
4.1
42
92
5
280
43
10
11
34
1.75
26945--27132
84
2.2
82
84
10
222
42
10
11
36
1.74
34665--34714
26
1.9
26
100
0
100
28
24
12
36
1.91
35289--35359
29
2.4
29
83
6
81
47
15
19
16
1.82
40132--40180
17
2.9
16
85
8
62
34
22
20
22
1.97
50970--51047
22
3.5
22
79
10
79
39
11
8
39
1.73
51091--51137
21
2.2
21
85
7
60
25
21
8
44
1.80
51866--51906
17
2.4
18
84
12
59
46
0
0
53
1.00
52031--52055
10
2.5
10
100
0
50
0
32
0
68
0.90
60254--60278
10
2.5
10
100
0
50
68
0
32
0
0.90
60399--60451
2
30.5
2
72
27
50
52
0
0
47
1.00
61102--61140
2
19.5
2
94
0
69
48
2
0
48
1.15
63526--63556
13
2.4
13
94
0
53
45
12
0
41
1.42
64060--64101
21
2.0
21
100
0
84
33
38
4
23
1.76
65317--65370
24
2.2
24
96
0
99
22
9
25
42
1.83
67878--67920
17
2.6
16
85
10
59
20
23
20
34
1.96
71337--71378
2
21.0
2
90
9
68
50
2
0
47
1.14
71337--71384
12
4.2
11
85
15
62
50
2
2
45
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77115--77775
340
1.9
341
81
6
795
36
15
14
32
1.88
76473--77771
343
3.9
327
74
10
1001
37
15
14
33
1.87

Tables:   1

The End!