Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020389.1 Corchorus olitorius cultivar O-4 contig20422, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67186

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
719--758
21
1.9
21
89
0
62
45
10
12
32
1.75
1226--1265
21
1.9
21
89
0
62
47
7
12
32
1.69
285--1726
507
2.8
505
94
1
2471
35
16
13
34
1.88
3452--4795
331
4.0
329
78
7
1197
37
14
14
34
1.86
5146--5175
15
1.9
16
93
6
53
53
3
0
43
1.17
5214--5252
20
2.0
20
100
0
78
53
0
5
41
1.23
5220--5264
20
2.2
20
84
7
56
57
2
2
37
1.23
8042--8124
28
3.0
28
91
5
125
31
15
19
33
1.93
11305--11369
33
2.0
33
93
0
112
44
12
16
26
1.83
27847--28037
96
2.0
94
90
2
301
40
20
21
16
1.91
37338--37368
2
15.5
2
100
0
62
51
0
0
48
1.00
37557--37593
3
12.7
3
83
16
51
37
0
0
62
0.96
37556--37591
17
2.1
17
90
10
56
38
0
0
61
0.96
40640--40682
20
2.1
21
91
4
70
37
13
13
34
1.85
47149--47183
16
2.2
16
100
0
70
42
5
0
51
1.25
52040--52087
12
4.1
12
79
12
55
39
0
0
60
0.97
52044--52089
23
1.9
23
86
8
65
43
0
0
56
0.99
52042--52095
24
2.2
24
81
15
67
44
0
0
55
0.99
52059--52156
39
2.4
39
79
8
97
46
3
0
50
1.17
53035--53066
12
2.5
13
95
5
57
43
0
0
56
0.99
54052--54095
21
2.1
21
87
4
63
56
0
2
40
1.11
57980--58006
14
1.9
14
100
0
54
74
7
7
11
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58132--58160
2
15.0
2
92
7
51
0
51
0
48
1.00
58238--58270
2
16.5
2
100
0
66
0
51
0
48
1.00
60439--60522
43
2.0
43
83
4
107
26
17
13
42
1.86
67137--67183
2
23.5
2
100
0
94
51
0
48
0
1.00

Tables:   1

The End!