Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002039.1 Corchorus olitorius cultivar O-4 contig02039, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7235
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:1192 original size:2 final size:2

Alignment explanation


    Indices: 1185--1217  Score: 57
    Period size: 2  Copynumber: 16.5  Consensus size: 2

       1175 CATCATCATC

                                                 *           
       1185 AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       1218 ATCACTTGTG


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45


Consensus pattern (2 bp):   
AT

Done.