Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020390.1 Corchorus olitorius cultivar O-4 contig20423, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102310

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
204--388
84
2.2
81
84
11
223
45
18
9
25
1.79
1737--1807
36
2.0
36
97
0
133
30
11
26
30
1.91
1838--1925
45
2.0
45
97
0
167
50
12
13
23
1.76
11846--12113
136
2.0
136
99
0
527
47
11
18
22
1.81
15245--15269
13
1.9
13
100
0
50
40
0
4
56
1.18
19837--19894
13
4.5
13
79
12
66
18
10
15
55
1.68
20147--20196
15
2.9
19
72
27
58
38
16
4
42
1.66
20749--20778
2
15.0
2
100
0
60
50
0
0
50
1.00
24602--24638
19
1.9
19
88
0
56
37
13
16
32
1.87
27178--27238
30
2.1
29
84
3
77
32
22
22
21
1.98
28149--28199
10
5.0
10
75
13
50
29
19
11
39
1.87
35755--35794
21
2.0
21
90
5
64
70
5
10
15
1.32
36624--36680
2
30.0
2
79
10
66
47
5
0
47
1.24
61835--61870
7
5.1
7
100
0
72
13
27
44
13
1.82
65126--65174
24
2.0
24
100
0
98
12
8
32
46
1.71
66414--66440
2
13.5
2
100
0
54
48
0
0
51
1.00
68482--68541
21
3.0
21
73
9
61
40
15
5
40
1.68
73038--73096
29
2.0
30
86
3
84
50
3
3
42
1.35
75651--75691
7
5.9
7
100
0
82
58
12
0
29
1.34
76768--76838
36
2.0
36
91
5
117
50
19
4
25
1.65
86568--86623
22
2.8
20
79
12
60
33
12
39
14
1.83
89702--89819
58
2.0
61
85
8
163
27
17
21
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
89801--89877
40
1.9
40
91
0
127
31
10
19
38
1.85
92286--92725
198
2.2
198
97
0
835
35
19
19
25
1.95
95744--95790
21
2.2
21
88
0
67
44
6
21
27
1.76
95757--95805
21
2.2
21
89
7
71
40
8
16
34
1.78
95847--95917
22
3.2
22
78
11
74
40
7
12
39
1.70

Tables:   1

The End!