Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020391.1 Corchorus olitorius cultivar O-4 contig20424, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18055

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2971--3010
20
2.0
20
100
0
80
30
30
20
20
1.97
3044--3094
2
25.5
2
95
0
93
50
47
0
1
1.12
3448--3483
3
12.3
3
88
5
56
36
0
0
63
0.94
3442--3478
17
2.1
18
90
5
58
40
0
0
59
0.97
6164--6201
18
2.1
18
85
9
51
55
2
15
26
1.54
8071--8105
18
1.9
18
88
11
54
68
2
11
17
1.31
8869--8893
13
1.9
13
100
0
50
56
0
0
44
0.99
10634--10686
17
3.1
17
68
10
54
54
13
7
24
1.64
11228--11262
15
2.2
17
90
10
56
48
0
0
51
1.00
11945--11969
13
1.9
13
100
0
50
40
20
0
40
1.52
12675--12726
12
4.4
11
78
11
50
36
0
5
57
1.23
13224--13261
11
3.5
11
89
10
51
39
0
2
57
1.12
15125--15196
29
2.4
30
83
4
83
27
29
13
29
1.95
15461--15510
2
25.0
2
87
0
73
46
2
4
48
1.32
16162--16281
31
3.9
30
76
14
104
35
11
23
30
1.90
16209--16281
29
2.4
31
81
6
87
34
9
24
31
1.88

Tables:   1

The End!