Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01020396.1 Corchorus olitorius cultivar O-4 contig20429, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 256492
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Found at i:1305 original size:331 final size:326
Alignment explanation
Indices: 1--1856 Score: 1348
Period size: 331 Copynumber: 5.7 Consensus size: 326
** * * * *
1 AAAATTTTGCAAAAATTGACCGGAAAGATATTCCCTCAATTTTTTGCTAAATTA-TCATAAAAGA
1 AAAATTTTGCAAAAATTGACCCAAAAGATATTTCCTCAATTTTTGGATAAAATACTCAT-AAA-A
* * * * * * * * * *
65 ATATATAATTCTATGCC--AAATATTGAAGGATATTTTACGCTTCTAATAT-ATTTTTCATACTT
64 ATATATAATTCAACGCCAAAAAGATTGAGGGCT-TTTGACACTTTTAATATCGTTTTTCATATTT
** * * * * * *
127 TTTCCGATTTAATTTCTAATTAAATCGAAACAAGATTTAGGTGCTCGTAAAAACAAATCCTTAAA
128 TTTCTAAATTAATTTCTAATTAAATCGAAACAAAATTCAGATGCTTGTAAAAACAAATTCTTAAA
* *
192 TCCAATGTGGCTGAGATTTGATTAGATGAATATAGATAGTTCAAGGAGTCTTGACGCCAAAAATC
193 TCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGACGCCAAAAATC
* * * ** * * * * * * *
257 ATGCAATACTGATCCGGGGTCCTGGAACGCGTTTTTAGCAAAAAAAAAAAAAT-CATGATGTTGC
258 ATGCAAAATTGAGCCGGGG-CCCAGAA-GCTTTTTTAGC------CAAAAATTGGATGTTATTAC
*
321 ACAATTTCGGC-
315 ACGATTTCGGCT
* * * * * * *
332 AAATATTTTGCAAAAAATGACCCGAAATATTTTTCCTCAATTTTTAG-T----CAC-AAT-AAAA
1 AAA-ATTTTGCAAAAATTGACCCAAAAGATATTTCCTCAATTTTTGGATAAAATACTCATAAAAA
* * ** * * * * *
390 TATATAGTGCAACGCCAAAAAGATTGAAGGGAATTTCACGCTTCTAATACCGTTTTTCCTATTTT
65 TATATAATTCAACGCCAAAAAGATTG-AGGGCTTTTGACACTTTTAATATCGTTTTTCATATTTT
** * ** * * *
455 TTCCGAATTAATTTCTAATTAAAACGAAACATGATTCAGATTCATTATAAAAAC-AA----T-GA
129 TTCTAAATTAATTTCTAATTAAATCGAAACAAAATTCAGATGC-TTGTAAAAACAAATTCTTAAA
* * * * * *
514 --C----T-G--G-GATTTGGTTAGATAAATATAGAAATTTCAAGCAGTCTCGGCGCTAAAAATC
193 TCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGACGCCAAAAATC
* * *** * * * ** * *
569 ATTCAAAACTGAAATGGGCCCCA-AAACGTGTTTTTAGCTAAAAACCGTGATAATTATTACACAA
258 ATGCAAAATTGAGCCGGGGCCCAGAAGC-T-TTTTTAGCCAAAAATTG-GAT-GTTATTACACGA
633 TTTCGGCT
319 TTTCGGCT
* * * ** *
641 AAAATTTTGCACAAATTGACCCGAAAGATATTTCCTCAATTTTTAGCCATAATACTCATAAAAA-
1 AAAATTTTGCAAAAATTGACCCAAAAGATATTTCCTCAATTTTTGGATAAAATACTCATAAAAAT
* * * *
705 ATATATTTCAATGCCAAAAAGATTGAAGGGCTTTTGACGCTTTTAATATGGTTTTTCATATTTTT
66 ATATAATTCAACGCCAAAAAGATTG-AGGGCTTTTGACACTTTTAATATCGTTTTTCATA-TTTT
** * *
770 TTCTAAATTAATTTCTAATTAAATCGAAACATGATTCAGATACTCAT-TAAAAACAAAAAAAAAT
129 TTCTAAATTAATTTCTAATTAAATCGAAACAAAATTCAGATGCT--TGTAAAAAC-----AAATT
* * * * * *
834 CTTAAATCCAATTTGGCTAAGATTTTATTAGATGAATATAGTTATTTCAAGGAGTGTCGGCGCCA
187 CTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGACGCCA
* * * * * * * *
899 AAAATCATGCAAAACTGAGCTGGTGCCCCGAAACGCATTTTTAGCCAAAACTT--A-GCTAATAC
252 AAAATCATGCAAAATTGAGCCGGGGCCCAG-AA-GCTTTTTTAGCCAAAAATTGGATGTTATTAC
*
961 AC-ATTTTGGCT
315 ACGATTTCGGCT
* * * * * *
972 AAAATTTTGTAAAAAATGACCCAAAAAATTTTTTCTCAATTTTTGGATAAAATACTCCTAAAATA
1 AAAATTTTGCAAAAATTGACCCAAAAGATATTTCCTCAATTTTTGGATAAAATACTCATAAAA-A
* * * * * *
1037 TATATAATTTAACGGCAAAAAGATTGGGGGACTTTTCACATTTTTAATATCATTTTTCATA-TTT
65 TATATAATTCAACGCCAAAAAGATTGAGGG-CTTTTGACACTTTTAATATCGTTTTTCATATTTT
** * * * *
1101 TTCTGTATTAATTTTTAATTAAACCGAAACAAAATTTAGATGCTTGTAAAAACAAATTTTTAAAT
129 TTCTAAATTAATTTCTAATTAAATCGAAACAAAATTCAGATGCTTGTAAAAACAAATTCTTAAAT
* * *
1166 CCAATGTGGCTGGGATTTGATTAGATGAATATAGATATCTCAAGGAGTCTTGACGCCAAAAATCA
194 CCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGACGCCAAAAATCA
* *
1231 TGCAAAATTGAGCCGGGGCCACAGAATGCTTTTTTATCAAAAAATTGCGATGGTTATTACACGAT
259 TGCAAAATTGAGCCGGGGCC-CAGAA-GCTTTTTTAGCCAAAAATTG-GAT-GTTATTACACGAT
1296 TTCGGCT
320 TTCGGCT
* ** * * *
1303 AAATTTTTTTAAAAATTGACTCGAAAGATATTTCCTCAATTTTTGGATAAAGTACTCATAAAAAA
1 AAAATTTTGCAAAAATTGACCCAAAAGATATTTCCTCAATTTTTGGATAAAATACTCAT-AAAAA
* * * *
1368 TATATGATTCAACGCCAAAAAGATTAAAGGGCTTTTGACA-TTTCTAATCTCGTTTTTCCTATTT
65 TATATAATTCAACGCCAAAAAGATT-GAGGGCTTTTGACACTTT-TAATATCGTTTTT-C-ATAT
* * * * ** *
1432 TTTTTTTCAAATTAATTTCTAATTAAGTCGAAACAGAATTCAGACGCTCATAAAGACAAATTCTT
126 TTTTTCT-AAATTAATTTCTAATTAAATCGAAACAAAATTCAGATGCTTGTAAAAACAAATTCTT
* * * * *
1497 AAATCTAATGTGGGTGAGATTTGATTAGATGAATATATATATTTCAAGTAGTCTCGGA-GCCAGA
190 AAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTC-GACGCCAAA
* * ** * ** *
1561 AATCATGCAAAATTTAGCCAAGTCCCCGGAA-CATGTTTTTAGCCAAAAACCGTGATGTTAGTAC
254 AATCATGCAAAATTGAGCC-GGGGCCCAGAAGC-T-TTTTTAGCCAAAAATTG-GATGTTATTAC
**
1625 ACGATTTCAACT
315 ACGATTTCGGCT
* * * *
1637 AAAATTTTGCAAAAATTGACACAAAAGAT-TTCTTCTCATTTTTTGGCTAAAATACTCATAAAAA
1 AAAATTTTGCAAAAATTGACCCAAAAGATATT-TCCTCAATTTTTGGATAAAATACTCATAAAAA
* * * * * *
1701 TATATAATTCAACGCCAAAAATATTGGAGGGCTTTTTACGCTTTTAATATTGTATTTCTTATTTT
65 TATATAATTCAACGCCAAAAAGATT-GAGGGCTTTTGACACTTTTAATATCGTTTTTCATATTTT
* *
1766 TTCTAAATTAATTTCTAATTAAATTGAAACAAGATTCAGATG-TTCGTAAAAACAAATTCTTAAA
129 TTCTAAATTAATTTCTAATTAAATCGAAACAAAATTCAGATGCTT-GTAAAAACAAATTCTTAAA
* * * *
1830 TCCAATGTTGTTAAGATTTGGTTAGAT
193 TCCAATGTGGCTGAGATTTGATTAGAT
1857 AATGTAAAGT
Statistics
Matches: 1211, Mismatches: 242, Indels: 145
0.76 0.15 0.09
Matches are distributed among these distances:
305 5 0.00
307 2 0.00
308 54 0.04
309 4 0.00
310 2 0.00
311 10 0.01
312 56 0.05
313 3 0.00
314 53 0.04
315 55 0.05
316 2 0.00
320 1 0.00
321 2 0.00
322 1 0.00
323 1 0.00
324 14 0.01
325 103 0.09
326 25 0.02
327 57 0.05
328 10 0.01
329 2 0.00
330 90 0.07
331 209 0.17
332 58 0.05
333 101 0.08
334 75 0.06
335 136 0.11
336 65 0.05
337 12 0.01
338 2 0.00
339 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (326 bp):
AAAATTTTGCAAAAATTGACCCAAAAGATATTTCCTCAATTTTTGGATAAAATACTCATAAAAAT
ATATAATTCAACGCCAAAAAGATTGAGGGCTTTTGACACTTTTAATATCGTTTTTCATATTTTTT
CTAAATTAATTTCTAATTAAATCGAAACAAAATTCAGATGCTTGTAAAAACAAATTCTTAAATCC
AATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGACGCCAAAAATCATG
CAAAATTGAGCCGGGGCCCAGAAGCTTTTTTAGCCAAAAATTGGATGTTATTACACGATTTCGGC
T
Found at i:2235 original size:15 final size:16
Alignment explanation
Indices: 2217--2246 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
2207 ATAAATAATA
2217 ATATTATAAT-TAAAT
1 ATATTATAATCTAAAT
2232 ATATTATAATCTAAA
1 ATATTATAATCTAAA
2247 AATAATTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (16 bp):
ATATTATAATCTAAAT
Found at i:2516 original size:8 final size:8
Alignment explanation
Indices: 2503--2601 Score: 132
Period size: 8 Copynumber: 12.2 Consensus size: 8
2493 ATTTTATATA
2503 ATAGTAAG
1 ATAGTAAG
2511 ATAGTAAG
1 ATAGTAAG
2519 ATAGTAAG
1 ATAGTAAG
2527 ATAGTAAG
1 ATAGTAAG
2535 ATAGTAAG
1 ATAGTAAG
2543 ATAGTAAG
1 ATAGTAAG
*
2551 ATAAAATAAG
1 AT--AGTAAG
2561 ATAGTAAG
1 ATAGTAAG
2569 ATAGTAAG
1 ATAGTAAG
2577 ATA--AA-
1 ATAGTAAG
2582 ATAAGATAAG
1 AT-AG-TAAG
2592 ATAGTAAG
1 ATAGTAAG
2600 AT
1 AT
2602 TAATGAATGA
Statistics
Matches: 82, Mismatches: 2, Indels: 14
0.84 0.02 0.14
Matches are distributed among these distances:
5 2 0.02
6 3 0.04
8 64 0.78
9 4 0.05
10 9 0.11
ACGTcount: A:0.55, C:0.00, G:0.21, T:0.24
Consensus pattern (8 bp):
ATAGTAAG
Found at i:2567 original size:26 final size:23
Alignment explanation
Indices: 2531--2589 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 23
2521 AGTAAGATAG
2531 TAAGATAGTAAGATAGTAAGATAAAA
1 TAAGATAGTAAGATA--AA-ATAAAA
2557 TAAGATAGTAAGATAGTAAGATAAAA
1 TAAGATAGTAAGATA--AA-ATAAAA
2583 TAAGATA
1 TAAGATA
2590 AGATAGTAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.58, C:0.00, G:0.19, T:0.24
Consensus pattern (23 bp):
TAAGATAGTAAGATAAAATAAAA
Found at i:3433 original size:62 final size:62
Alignment explanation
Indices: 3336--3464 Score: 258
Period size: 62 Copynumber: 2.1 Consensus size: 62
3326 TGAATAATTA
3336 ACTTTTTATTTTTCGGTTTTCACCAATAAGTATTGCATGGATTTAATTAAGGCATAAATACC
1 ACTTTTTATTTTTCGGTTTTCACCAATAAGTATTGCATGGATTTAATTAAGGCATAAATACC
3398 ACTTTTTATTTTTCGGTTTTCACCAATAAGTATTGCATGGATTTAATTAAGGCATAAATACC
1 ACTTTTTATTTTTCGGTTTTCACCAATAAGTATTGCATGGATTTAATTAAGGCATAAATACC
3460 ACTTT
1 ACTTT
3465 ACACCTTTAA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 67 1.00
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.43
Consensus pattern (62 bp):
ACTTTTTATTTTTCGGTTTTCACCAATAAGTATTGCATGGATTTAATTAAGGCATAAATACC
Found at i:36163 original size:25 final size:25
Alignment explanation
Indices: 36135--36185 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
36125 CCACCGAGCA
36135 ATGCCCCTGTTGATATTTTGTGGGT
1 ATGCCCCTGTTGATATTTTGTGGGT
36160 ATGCCCCTGTTGATATTTTGTGGGT
1 ATGCCCCTGTTGATATTTTGTGGGT
36185 A
1 A
36186 AATTGTGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.14, C:0.16, G:0.27, T:0.43
Consensus pattern (25 bp):
ATGCCCCTGTTGATATTTTGTGGGT
Found at i:39916 original size:2 final size:2
Alignment explanation
Indices: 39909--39943 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
39899 CACCTCTCCT
39909 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
39944 TCCCCTAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:47214 original size:30 final size:29
Alignment explanation
Indices: 47138--47215 Score: 84
Period size: 29 Copynumber: 2.7 Consensus size: 29
47128 GAACTTACAC
*
47138 AAAACAGCCAAATAAGCCCATGAACTCTT
1 AAAAAAGCCAAATAAGCCCATGAACTCTT
** * * * *
47167 ATTACAGCCACATAAGCCCCTGAACTTTT
1 AAAAAAGCCAAATAAGCCCATGAACTCTT
47196 AAAAAAGACCAAATAAGCCC
1 AAAAAAG-CCAAATAAGCCC
47216 TATTCTGAAG
Statistics
Matches: 39, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
29 28 0.72
30 11 0.28
ACGTcount: A:0.44, C:0.28, G:0.10, T:0.18
Consensus pattern (29 bp):
AAAAAAGCCAAATAAGCCCATGAACTCTT
Found at i:51022 original size:20 final size:20
Alignment explanation
Indices: 50999--51039 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
50989 AACCAATAAA
50999 TCACAAAATTCAAGAAAAAG
1 TCACAAAATTCAAGAAAAAG
51019 TCACAAAATTCAAGAAAAAG
1 TCACAAAATTCAAGAAAAAG
51039 T
1 T
51040 TTTGGGACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.59, C:0.15, G:0.10, T:0.17
Consensus pattern (20 bp):
TCACAAAATTCAAGAAAAAG
Found at i:52095 original size:30 final size:30
Alignment explanation
Indices: 52060--52120 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
52050 ATTTTTAACT
* * *
52060 TGACTTTCCTCCTATATCCTCAAATTTTAA
1 TGACTTTCCTCCTATACCCCCAAATTGTAA
*
52090 TGACTTTCCTCTTATACCCCCAAATTGTAA
1 TGACTTTCCTCCTATACCCCCAAATTGTAA
52120 T
1 T
52121 ATTTTACTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.26, C:0.28, G:0.05, T:0.41
Consensus pattern (30 bp):
TGACTTTCCTCCTATACCCCCAAATTGTAA
Found at i:58330 original size:57 final size:57
Alignment explanation
Indices: 58242--58356 Score: 230
Period size: 57 Copynumber: 2.0 Consensus size: 57
58232 GAGATTTAGA
58242 GCGTCTAGGTATTTGCATTGCATTGCTAGCTCCCGCAGCTGAGTGTTCCAAGTAAGC
1 GCGTCTAGGTATTTGCATTGCATTGCTAGCTCCCGCAGCTGAGTGTTCCAAGTAAGC
58299 GCGTCTAGGTATTTGCATTGCATTGCTAGCTCCCGCAGCTGAGTGTTCCAAGTAAGC
1 GCGTCTAGGTATTTGCATTGCATTGCTAGCTCCCGCAGCTGAGTGTTCCAAGTAAGC
58356 G
1 G
58357 AGGTCATGGG
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.19, C:0.24, G:0.27, T:0.30
Consensus pattern (57 bp):
GCGTCTAGGTATTTGCATTGCATTGCTAGCTCCCGCAGCTGAGTGTTCCAAGTAAGC
Found at i:58889 original size:21 final size:20
Alignment explanation
Indices: 58863--58909 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 20
58853 TTTTTACTTT
58863 TTTCTCTCCATTTTC-TTTTC
1 TTTCTCT-CATTTTCTTTTTC
58883 TTCTCTCTCATTTTCTTTTTC
1 TT-TCTCTCATTTTCTTTTTC
58904 TTTCTC
1 TTTCTC
58910 CTCCTTCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 13 0.52
21 12 0.48
ACGTcount: A:0.04, C:0.30, G:0.00, T:0.66
Consensus pattern (20 bp):
TTTCTCTCATTTTCTTTTTC
Found at i:58909 original size:20 final size:20
Alignment explanation
Indices: 58863--58909 Score: 69
Period size: 19 Copynumber: 2.3 Consensus size: 20
58853 TTTTTACTTT
58863 TTTCTCTCCATTTTCTTTTC
1 TTTCTCTCCATTTTCTTTTC
58883 -TTCTCTCTCATTTTCTTTTTC
1 TTTCTCTC-CATTTTC-TTTTC
58904 TTTCTC
1 TTTCTC
58910 CTCCTTCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.29
20 7 0.29
21 5 0.21
22 5 0.21
ACGTcount: A:0.04, C:0.30, G:0.00, T:0.66
Consensus pattern (20 bp):
TTTCTCTCCATTTTCTTTTC
Found at i:58919 original size:25 final size:20
Alignment explanation
Indices: 58854--58901 Score: 73
Period size: 19 Copynumber: 2.5 Consensus size: 20
58844 CTAATTAATT
58854 TTTTACTTTT-TTCTCTC-CA
1 TTTT-CTTTTCTTCTCTCTCA
58873 TTTTCTTTTCTTCTCTCTCA
1 TTTTCTTTTCTTCTCTCTCA
58893 TTTTCTTTT
1 TTTTCTTTT
58902 TCTTTCTCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.19
19 11 0.41
20 11 0.41
ACGTcount: A:0.06, C:0.25, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTTCTTTTCTTCTCTCTCA
Found at i:61044 original size:16 final size:15
Alignment explanation
Indices: 61013--61096 Score: 68
Period size: 16 Copynumber: 5.6 Consensus size: 15
61003 TAAAAATGGG
61013 AATAAAAAATTAAAA
1 AATAAAAAATTAAAA
61028 AATAAAAAATGGT-AAA
1 AATAAAAAAT--TAAAA
* *
61044 AATAAAATTATTTAAA
1 AATAAAA-AATTAAAA
* *
61060 AAT-AAATATT-AAT
1 AATAAAAAATTAAAA
61073 AAT-AAAAATTAAAA
1 AATAAAAAATTAAAA
61087 AATAATAAAA
1 AATAA-AAAA
61097 ATAACTAAAA
Statistics
Matches: 58, Mismatches: 4, Indels: 13
0.77 0.05 0.17
Matches are distributed among these distances:
13 11 0.19
14 9 0.16
15 15 0.26
16 20 0.34
17 3 0.05
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26
Consensus pattern (15 bp):
AATAAAAAATTAAAA
Found at i:61066 original size:29 final size:27
Alignment explanation
Indices: 61017--61091 Score: 69
Period size: 29 Copynumber: 2.6 Consensus size: 27
61007 AATGGGAATA
*
61017 AAAAATTAAAAAATAAAAAATGGTAAAAAT
1 AAAAATTAAAAAAT---AAATAGTAAAAAT
* * *
61047 AAAATTATTTAAAAATAAATATTAATAAT
1 AAAA--ATTAAAAAATAAATAGTAAAAAT
61076 AAAAATTAAAAAATAA
1 AAAAATTAAAAAATAA
61092 TAAAAATAAC
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
27 11 0.29
29 14 0.37
30 4 0.11
32 9 0.24
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.27
Consensus pattern (27 bp):
AAAAATTAAAAAATAAATAGTAAAAAT
Found at i:69000 original size:31 final size:31
Alignment explanation
Indices: 68962--69193 Score: 311
Period size: 31 Copynumber: 7.5 Consensus size: 31
68952 ACGGTGTCCG
* *
68962 ACGTGGCATGCCACGTGTACCAAAAATTGAC
1 ACGTGGCATGCCACATGTACCAAAAAGTGAC
* * *
68993 ACGTGGCACGCCACGTGCACCAAAAAGTGAC
1 ACGTGGCATGCCACATGTACCAAAAAGTGAC
** * * *
69024 AAATGGCACGCGCACATGTGCCAAATAGTGAC
1 ACGTGGCATGC-CACATGTACCAAAAAGTGAC
* *
69056 ATGTGTCATGCCACATGTACCAAAAAGTGAC
1 ACGTGGCATGCCACATGTACCAAAAAGTGAC
*
69087 ACGTGACATGCCACATGTACCAAAAAGTGAC
1 ACGTGGCATGCCACATGTACCAAAAAGTGAC
*
69118 ACGTGACATGCCACATGTACCAAAAAGTGAC
1 ACGTGGCATGCCACATGTACCAAAAAGTGAC
*
69149 ACGTGACATGCCACATGTACCAAAAAGTGAC
1 ACGTGGCATGCCACATGTACCAAAAAGTGAC
*
69180 ATGTGGCATGCCAC
1 ACGTGGCATGCCAC
69194 GTCGGACGCC
Statistics
Matches: 181, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
31 158 0.87
32 23 0.13
ACGTcount: A:0.35, C:0.26, G:0.22, T:0.17
Consensus pattern (31 bp):
ACGTGGCATGCCACATGTACCAAAAAGTGAC
Found at i:69773 original size:79 final size:77
Alignment explanation
Indices: 69621--69775 Score: 247
Period size: 79 Copynumber: 2.0 Consensus size: 77
69611 CGCCTAGTAT
* * * *
69621 GCAATGACAGGAGTCATATGCTCTGCAGTTGCCACCCTCGGTGGATCCTCTGCATCGGAAACTCC
1 GCAATGACAGGAGTAATATGCTATGCAGTTGCCACCCTCAGTGGATCCTCTGCATCAGAAACTCC
69686 CTAAATTGTTAA
66 CTAAATTGTTAA
69698 GCAATGAACAGGAGTAATATGCTATGCAGTTGCCACCCTCAAGTGGATCCTCTGCATCAGAAACT
1 GCAATG-ACAGGAGTAATATGCTATGCAGTTGCCACCCTC-AGTGGATCCTCTGCATCAGAAACT
*
69763 CCCTACATTGTTA
64 CCCTAAATTGTTA
69776 TACTAACCAA
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
77 6 0.08
78 31 0.44
79 34 0.48
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (77 bp):
GCAATGACAGGAGTAATATGCTATGCAGTTGCCACCCTCAGTGGATCCTCTGCATCAGAAACTCC
CTAAATTGTTAA
Found at i:96114 original size:8 final size:8
Alignment explanation
Indices: 96101--96134 Score: 50
Period size: 8 Copynumber: 4.0 Consensus size: 8
96091 GACTTGCTAG
96101 TCTTACTA
1 TCTTACTA
96109 TCTTACTA
1 TCTTACTA
96117 TCTTATCTTA
1 TCTTA-C-TA
96127 TCTTACTA
1 TCTTACTA
96135 CTATATAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 15 0.62
9 2 0.08
10 7 0.29
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.53
Consensus pattern (8 bp):
TCTTACTA
Found at i:96401 original size:15 final size:16
Alignment explanation
Indices: 96376--96405 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
96366 AATAATTATT
96376 TTTAGATTATAATATA
1 TTTAGATTATAATATA
96392 TTTA-ATTATAATAT
1 TTTAGATTATAATAT
96406 TATTATTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
TTTAGATTATAATATA
Found at i:99556 original size:995 final size:982
Alignment explanation
Indices: 96893--100553 Score: 2588
Period size: 995 Copynumber: 3.7 Consensus size: 982
96883 TTTTAGCCAA
* * * * * * **
96893 AAATTTT-AGCCGAAATCGTGTACTAACAAACTATCACGGTTTTTGGCTAAAAACGCGTTCCGGG
1 AAATTTTAAGCTGAAATCGTGTACT-ATAAGC-ATCACAGTTTTTGGTTGAAAACGCGTT-TAGG
* * * * *
96957 GA-CCCGGCTCAA-TTTTGCAT-AATTTCTGTCTCCGAGACTACTTGAAATATCTATATTCATCT
63 GACCCCGGCT-AAGTTTTGCATGAATTT-TGGCACCAAGACTCCTTGAAATATATATATTCATCT
* * * * * * *
97019 AATCAAATCTCACCCAAATT-AGATTTAAGGATTTGTCTTTACGAGCATCTGAATTTTGTTTTGA
126 AATCAAATCTTAGCCACATTGA-ATTTAAAGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGA
* ** * * * * * * **
97083 TTTAA-TAAGA-AATTAATTTGGAGAAAATAGGAAAAACGATATCAGATA-TGTCAAAAACCCTT
190 TTTAATTATGATAATTAA-TTCAAAAAAATTGGAAAAACGATATTA-AAAGCGTGAAAAGTCCTT
* * * * * * *
97145 CAATCTTTTTGGCA-TTGAGTTATATATTTTTTATGAGTATT-TTAGCCAAAAATTGAGGAATTA
253 CAATATTTTTGG-AGTTGAATTATATA--TTCTATGAGTATTGTGA-CTAAAAATGGAGGAA-AA
* * * * * * * *
97208 TCTTTCGGGTCAATTTTTACAAAATTTTAGCGGAAATCGTGTAATAACCATCACAGTTTTTGGAT
313 TATTTCGGGTCAATTTTTGCAAAATATTAGCCGAAATCGTG---T-ACTATCACGGTTTTTTGCT
* * * * * * * * * * * * * *
97273 AAAAAAGCGTT--GTGGCTCCAGCTCAGTTTTGCATGAATTTTTGGCACCAAAACTCCTTGAGAT
374 AAAAACGCCTTCCGAGGCCCCAGGTTAGTGTTGAATG-ATTTTTAGCGCCAACATTCCTTGAAAC
* * * * * * *** * *
97336 ATCTATATTCATCTAATCAAATCTCAGCCACATTGGATTTAA-AATTTT-TTTTACAAGCATCTA
438 ATCTATATTAATCTAACCAAATCCCAGCCAAACTGGATTTAAGGATTTTGTAAAACAAGCATTTG
* * * * *
97399 AATCTTGTTTCTATTTAATTAAAAATTACA---G--AAAAATATGAAAAATGATATTAAAAGCGT
503 AATCATGTTTCGATTTAATTAGAAATTA-ATTTGAAAAAAATATGAAAAACGATATTAGAAGCGT
* * * ** * * * ** ***
97459 GTAAAGTCCTCCAATCTTTTTACCGTTAAATTATATATATTTTAGGAGTATTTTATCCAAAAGTT
567 GAAAAATCCTTCAATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGCAGGTAAAA-TT
* * ** * * * ****
97524 GAGGAAAAATTTTTCGGGTCATTTTTTACAAAATTTTAGCCAAAATCGTGTACGTCA-CGGTTTT
631 GAGGAAAAA-ATTTC-GGTCAATTTTTGTAAAATTTTAGCCGAAATCGTGTA-ATAATC--AACA
*** * * * * * * *
97588 TTTTTTTTTGCTAAAAATGCGTTTCGAGGCACCAGCTCAGTTTTGCATGATTTTTGGCGCC--GA
691 CGATTTTTGGCTAAAAACGCGTTACAAGGCCCCAGCTAAGTTTTGCATGATTTTTGGCGCCAAAA
* * * * * * ** *
97651 CACTTCTTGAAATAACTATTTTCATCTAATAAAATCTTAGCCAAATT-ACATTTAA-AATTCTTT
756 CAC-T-TTGAGATATCCATATTCATCCAATAAAATCTCAGATACATTGA-ATTTAAGAA----TT
* * * * * *
97714 TTTTTTTAACGAGCATTTGAGTCATATTTCGATTTAATTAGAAATTAATTTAGAAAAAATATGAA
814 TATTTTT-ACGAGCATCTAAATCTTATTTCGATTTAATTAGAAATTAATTCAG-AAAAATATGAA
* * * * *
97779 AAACGATATTAAAAGTGTCAAAAGCCCTTC-AATCTTTTTGGCGTTGAATTATATATTTTTTATG
877 AAACGAT-GT-AAA--G-C-AAAG-CC-TCAAATCATTTTGGCGTTAAATTATATATATTTCATG
* ** * *
97843 AGTA-TTATGGCTAAAAATTGA-GGAATTATCTTTCAGGTCAA-TTTTTGC
934 AGTATTTAT-GCCAAAAATTGACGGAAAAATGTTTCAGGT-AATTTTTTAC
* * * * * **
97891 AAAATTTT-AGCCGAAATCGTGT--TATAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGGA
1 -AAATTTTAAGCTGAAATCGTGTACTATAAGCATCACAGTTTTTGGTTGAAAACGCGTTTAGGGA
*** * * **** * *
97953 -CCCATTTCAA-TTTTGAATGAGTTTTGGCGTTGAGACTCCTTGAAATATCTATATTCATCTAAC
65 CCCCGGCT-AAGTTTTGCATGAATTTTGGCACCAAGACTCCTTGAAATATATATATTCATCTAAT
** * * *
98016 CAAATC---G-CA-A--CCA-TT---G--TT-TTTATA--AGCATCTGAATCTTGTTTCGTTTTA
129 CAAATCTTAGCCACATTGAATTTAAAGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTA
* * *
98065 ATTA-GA-AATTAATTCGAAAAAAATAGGAAAAAC-AGTATTAGAAA-CGTGAAAAGCCCTTCGA
194 ATTATGATAATTAATTC-AAAAAAATTGGAAAAACGA-TATTA-AAAGCGTGAAAAGTCCTTCAA
* * * * * * *
98126 TCTTTTTGGCGTTGAATTATATATTTTTATGAGTATTATGACAAAAAATTGAGTAAAAATATTTC
256 TATTTTTGGAGTTGAATTATATA-TTCTATGAGTATTGTGACTAAAAATGGAG-GAAAATATTTC
* * * * ***
98191 GGGTCATTTTTTTTGCAAAATATTAGTCGAAATTGTGCAAC-ATTGCGATTTTTTTTTTTTTTTT
319 GGGTCA--ATTTTTGCAAAATATTAGCCGAAATCGTG-TACTA-T-C-A-------CGGTTTTTT
* * * * * * * * * *
98255 GCTAAAAACG-CTT-CTAGGACCCTAGGTCAGTATTGCATGATTTTTTGCGTCAAGACTCTTTG-
371 GCTAAAAACGCCTTCCGAGG-CCCCAGGTTAGTGTTGAATGATTTTTAGCGCCAACATTCCTTGA
* * * * * ***
98317 AACTATCTATATTCATCTAATCAAATCTCAGTGCC--ATTGGATTTAA-GAATTTGTTTTTACAA
435 AAC-ATCTATATTAATCTAACCAAATCCCA--GCCAAACTGGATTTAAGGATTTTG-TAAAACAA
* * * * * * *
98379 GCATCTAAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAGAGTATGAAAAACGATATTAG
496 GCATTTGAATCATGTTTCGATTTAATTAGAAATTAATTTGAAAAAAATATGAAAAACGATATTAG
* * * * *
98444 AAGCGTAAAAAATACTTCAATATTTTTGGTGTAGAATTATAT-TTTTTTATGA-TAATTTAGCA-
561 AAGCGTGAAAAATCCTTCAATCTTTTTGGCGTTGAATTATATATTTTTTATGAGT-A-TT-GCAG
** * ** * *
98506 AAAAAATTGAGGTAATATCTTTCGGCCAATTTTTGTAAAATTTTAGCTGAAATCGTGTAATAATC
623 GTAAAATTGAGG-AAAAAATTTCGGTCAATTTTTGTAAAATTTTAGCCGAAATCGTGTAATAATC
* * * * * *
98571 AACACGATTTTTGGCTAAAAATGCGTTACAAGGCTCCAGGTCAGTTTTGCATGATTTTTGGTGCT
687 AACACGATTTTTGGCTAAAAACGCGTTACAAGGCCCCAGCTAAGTTTTGCATGATTTTTGGCGCC
* * ** * *
98636 AAGACAAC-TTGAGATATCCATATTTATCCAATAAAATCTCAGATACATTGCGTTTAAGGATTTG
752 AAAAC-ACTTTGAGATATCCATATTCATCCAATAAAATCTCAGATACATTGAATTTAAGAATTTA
*
98700 TTTTTACGAGCATCTAAATCTTATTTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAT
816 TTTTTACGAGCATCTAAATCTTATTTCGATTTAATTAGAAATTAATTCAG-AAAAATATGAAAAA
* *
98765 CG-TG-AAA-C-AA-CCTCCAATCTTTTTGGCGTTAAATTATATATATTTCATGAGTATTT-TAG
880 CGATGTAAAGCAAAGCCTCAAATCATTTTGGCGTTAAATTATATATATTTCATGAGTATTTAT-G
* * *
98824 CCAAAAATTGA-GGAAAAAATGTTTCTGGTCATTTTTTGC
944 CCAAAAATTGACGG-AAAAATGTTTCAGGTAATTTTTTAC
* **
98863 AAAATTTTAAGC-GAAATCGTGTA-T-TAAGCATCACGGTTTTTTATTTTTGATAAAAACGCGTT
1 -AAATTTTAAGCTGAAATCGTGTACTATAAGCATCACAG--TTTT-TGGTTG---AAAACGCG-T
* * * * *
98925 TTAGGG-CCCTGGCTCAGTTTTGCATGATTTTTGGCATCAAGACTCTTTGAAATATATATATTCA
58 TTAGGGACCCCGGCTAAGTTTTGCATGAATTTTGGCACCAAGACTCCTTGAAATATATATATTCA
* * * *
98989 TCTAATCAAATTTTAGTCACATTGCATTTAAAGATTTGTTTTTACGAGTA-CTTGAATCTTGTTT
123 TCTAATCAAATCTTAGCCACATTGAATTTAAAGATTTGTTTTTACGAGCATC-TGAATCTTGTTT
* **
99053 AGATTTAATTA-GAT-TTTAATTCTGAAAAATAT-GAAAAACGATATTAAAAGCGTGAAAAGTCC
187 AGATTTAATTATGATAATTAATTCAAAAAAAT-TGGAAAAACGATATTAAAAGCGTGAAAAGTCC
* * *
99115 -TCTAATATTTTTGGAGTTGAATTTTATATATTTTATGAGTATTTTAGAC-AAAAATTGAGGAAA
251 TTC-AATATTTTTGGAGTTGAA--TTATATATTCTATGAGTATTGT-GACTAAAAATGGAGGAAA
* * *
99178 ACTATTTCTGGTCAATTTTTGTAAAATATTAGCTGAAATCGTGTACATTAGTCGAAATCACGGTT
312 A-TATTTCGGGTCAATTTTTGCAAAATATTAGCCGAAATCGTGTAC-----T----ATCACGGTT
99243 TTTT-CTTAAAAACGCCTTCCGAGGCCCC-GGTTCAGTGTTGAATGATTTGTT-GCGCCGAGAC-
367 TTTTGC-TAAAAACGCCTTCCGAGGCCCCAGGTT-AGTGTTGAATGATTT-TTAGCGCC-A-ACA
* *
99304 TT-CTTGAAACATCTATATTAATTTAACCAAATCCCATCCATAACT-GATTTAAGGA-TTTGTAA
427 TTCCTTGAAACATCTATATTAATCTAACCAAATCCCAGCCA-AACTGGATTTAAGGATTTTGTAA
99366 AACAAGCATTTGAATCATGTTTCGATTTAATTAGAAATTAATTTGAAAAATAATATGAAAAACGA
491 AACAAGCATTTGAATCATGTTTCGATTTAATTAGAAATTAATTTGAAAAA-AATATGAAAAACGA
* * * * * *
99431 TACTATAAGCATGAAAATTCCTTCAATCTTTTTGGCATTGAATTATATAATTTTTATGAGTATTG
555 TATTAGAAGCGTGAAAAATCCTTCAATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTG
* * *
99496 CAGGTAAAACTTGAGGAAACAAATTTCGAGTCAATTTTTGCAAAATTCTAGCCAAAATCGTGTAA
620 CAGGTAAAA-TTGAGGAAA-AAATTTCG-GTCAATTTTTGTAAAATTTTAGCCGAAATCGTGTAA
* * * * * **
99561 TAATCATCATGGTTTTTGGTTAAAAACGCGTTCCGGGGCCCCAGCTAAGTTTTGCATGATTTTTG
682 TAATCAACACGATTTTTGGCTAAAAACGCGTTACAAGGCCCCAGCTAAGTTTTGCATGATTTTTG
* * * *
99626 GCGCCAAAACTCTTTGAGATATCCATATTCATCTAATCAAATCTCAGCTACATTGAATTTAAGAA
747 GCGCCAAAACACTTTGAGATATCCATATTCATCCAATAAAATCTCAGATACATTGAATTTAAGAA
* * * * * * *
99691 TTTATTTTTACTAGTATTTGAATCTTGTTTCGATTTGATTAGAAATTAATTCTGAAAAATATGAA
812 TTTATTTTTACGAGCATCTAAATCTTATTTCGATTTAATTAGAAATTAATTCAGAAAAATATGAA
*
99756 AAACGATGTTAAAAGCGTGAAAAGTCCTCAAATCATTTTGGCGTTAAATTATATATATTTTATGA
877 AAACGATG-T-AAAGC----AAAG-CCTCAAATCATTTTGGCGTTAAATTATATATATTTCATGA
*
99821 GTATTTATGCCAAAAATTGACGGAAAAATTTTTCAGGTAATTTTTTAC
935 GTATTTATGCCAAAAATTGACGGAAAAATGTTTCAGGTAATTTTTTAC
* ** *
99869 AAATTTTTAGCTGAAATCGTGTACTATAATTATCACAGTTTTTGGTTGAAAACGCGTTTCGGGAC
1 AAATTTTAAGCTGAAATCGTGTACTATAAGCATCACAGTTTTTGGTTGAAAACGCGTTTAGGGAC
* * * *
99934 CCCGGCTAAGTTTTGCATGAATTTTGGCACCGAGATTCCTTGTAATATCTATATTCATCTAATCA
66 CCCGGCTAAGTTTTGCATGAATTTTGGCACCAAGACTCCTTGAAATATATATATTCATCTAATCA
* *
99999 AATCTTAGCCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAAT
131 AATCTTAGCCACATTGAATTTAAAGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAAT
* * *
100064 TATTATAAATTAATTCAAAAAAATTGGAAAAACGATATTAAAAGCGTGAAGAGTCCTTCAATCTT
196 TATGAT-AATTAATTCAAAAAAATTGGAAAAACGATATTAAAAGCGTGAAAAGTCCTTCAATATT
** * * * *
100129 TTTGGCTTTTAATTATGTATTCTATGAGTATTGTGGCTAGAAATGGAGGAAAATATTTCGGGTCA
260 TTTGGAGTTGAATTATATATTCTATGAGTATTGTGACTAAAAATGGAGGAAAATATTTCGGGTCA
* * * * *
100194 ATTTTTGCAAAATTTTAGCCGAAATTGTGTACTATCACGGTTTTTTGGCTAAAAACGCGTTCTGG
325 ATTTTTGCAAAATATTAGCCGAAATCGTGTACTATCACGGTTTTTT-GCTAAAAACGCCTTCCGA
* * * * * *
100259 GGCCCCAGGTTAGTTTTGCATGATTTTTAGTGGCAACATTCCTTGAAATATCTATATTCATCTAA
389 GGCCCCAGGTTAGTGTTGAATGATTTTTAGCGCCAACATTCCTTGAAACATCTATATTAATCTAA
** * * * *** * *
100324 CCAAATCTTAGCCACATTGGATTTAAGGATTTTTTTGTACGAGCATTTGAATCATGTTTCAATTT
454 CCAAATCCCAGCCAAACTGGATTTAAGGATTTTGTAAAACAAGCATTTGAATCATGTTTCGATTT
* * ** *
100389 AATTAGAAATTAATTTGAAAACAAATAGGAAAAACGATATTAGAAGCGTGAGAAGCCCTTCAAAC
519 AATTAGAAATTAATTTGAAAA-AAATATGAAAAACGATATTAGAAGCGTGAAAAATCCTTCAATC
* * *
100454 TTTTTGACGTTGAATTATATATTTTTTATGAGTATTG-TGGCTACAGATTGA-GAAAAATATTTC
583 TTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGCAGG-TA-AAATTGAGGAAAAA-ATTTC
*
100517 GGGTCAATTTTTGTAAAATTTTAGCCGAAATTGTGTA
645 -GGTCAATTTTTGTAAAATTTTAGCCGAAATCGTGTA
100554 CCATCATGTT
Statistics
Matches: 2155, Mismatches: 356, Indels: 307
0.76 0.13 0.11
Matches are distributed among these distances:
970 2 0.00
971 52 0.02
972 49 0.02
973 6 0.00
974 4 0.00
975 4 0.00
976 3 0.00
977 41 0.02
978 100 0.05
979 86 0.04
980 4 0.00
981 2 0.00
982 2 0.00
983 59 0.03
984 12 0.01
985 74 0.03
986 21 0.01
987 134 0.06
988 3 0.00
989 37 0.02
990 24 0.01
991 62 0.03
992 71 0.03
993 174 0.08
994 279 0.13
995 417 0.19
996 17 0.01
997 2 0.00
998 3 0.00
999 23 0.01
1000 1 0.00
1001 7 0.00
1002 166 0.08
1003 35 0.02
1004 3 0.00
1005 70 0.03
1006 93 0.04
1007 4 0.00
1008 9 0.00
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.38
Consensus pattern (982 bp):
AAATTTTAAGCTGAAATCGTGTACTATAAGCATCACAGTTTTTGGTTGAAAACGCGTTTAGGGAC
CCCGGCTAAGTTTTGCATGAATTTTGGCACCAAGACTCCTTGAAATATATATATTCATCTAATCA
AATCTTAGCCACATTGAATTTAAAGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAAT
TATGATAATTAATTCAAAAAAATTGGAAAAACGATATTAAAAGCGTGAAAAGTCCTTCAATATTT
TTGGAGTTGAATTATATATTCTATGAGTATTGTGACTAAAAATGGAGGAAAATATTTCGGGTCAA
TTTTTGCAAAATATTAGCCGAAATCGTGTACTATCACGGTTTTTTGCTAAAAACGCCTTCCGAGG
CCCCAGGTTAGTGTTGAATGATTTTTAGCGCCAACATTCCTTGAAACATCTATATTAATCTAACC
AAATCCCAGCCAAACTGGATTTAAGGATTTTGTAAAACAAGCATTTGAATCATGTTTCGATTTAA
TTAGAAATTAATTTGAAAAAAATATGAAAAACGATATTAGAAGCGTGAAAAATCCTTCAATCTTT
TTGGCGTTGAATTATATATTTTTTATGAGTATTGCAGGTAAAATTGAGGAAAAAATTTCGGTCAA
TTTTTGTAAAATTTTAGCCGAAATCGTGTAATAATCAACACGATTTTTGGCTAAAAACGCGTTAC
AAGGCCCCAGCTAAGTTTTGCATGATTTTTGGCGCCAAAACACTTTGAGATATCCATATTCATCC
AATAAAATCTCAGATACATTGAATTTAAGAATTTATTTTTACGAGCATCTAAATCTTATTTCGAT
TTAATTAGAAATTAATTCAGAAAAATATGAAAAACGATGTAAAGCAAAGCCTCAAATCATTTTGG
CGTTAAATTATATATATTTCATGAGTATTTATGCCAAAAATTGACGGAAAAATGTTTCAGGTAAT
TTTTTAC
Found at i:99661 original size:668 final size:659
Alignment explanation
Indices: 96892--100554 Score: 2886
Period size: 663 Copynumber: 5.5 Consensus size: 659
96882 ATTTTAGCCA
* * * *
96892 AAAATTTTAGCCGAAATCGTGTACTAACAAACTATCACGG-TTTTTGGCTAAAAACGCGTTCCGG
1 AAAATTTTAGCCGAAATCGTG---TAATAATC-ATCATGGTTTTTTGGCTAAAAACGCGTTCTGG
* * * * * * * * *
96956 GGACCCGGCTCAATTTTGCATAATTTCTGTCTCCGAGACTAC-TTGAAATATCTATATTCATCTA
62 GGCCCCAGCTCAGTTTTGCATGATTTTTGGCGCCAACACT-CTTTGAAATATCTATATTCATCTA
* * * * * * * *
97020 ATCAAATCTCACCCAAATTAG-ATTTAAGGATTTGTCTTTACGAGCATCTGAATTTTGTTTTGAT
126 ATCAAATCTTAGCCACATT-GCATTTAAAGATTTGTTTTTACGAGCATTTGAATCTTGTTTCGAT
* * * * * * **
97084 TTAATAAGAAATTAATT-TGGAGAAAATAGGAAAAACGATATCAGATA-TGTCAAAAACCCTTCA
190 TTAATTAGAAATTAATTCT-GA-AAAATATGAAAAACGATATTA-AAAGCGTGAAAAGTCCTTCA
* * * * *
97147 ATCTTTTTGGCA-TTGAGTTATATATTTTTTATGAGTATTTTAGCCAAAAATTGAGGAATTATCT
252 ATATTTTTGG-AGTTGAATTATATATTTTTTATGAGTATTTTAGACAAAAATTGAGGAA-AATAT
* ** * * * *
97211 TTCGGGTCAATTTTTACAAAATTTTAGCGGAAATCGTGTA-ATAA-CCATCACAGTTTTTGGATA
315 TTCAGGTCAATTTTTGTAAAATTTTAGCTGAAATCGTGTACATAATCAATCACGGTTTTTGGCTA
* * * * * * * * * *
97274 AAAAAGCGTT--GTGGCTCCAGCTCAGTTTTGCATGAATTTTTGGCACCAAAACTCCTTGAGATA
380 AAAACGCGTTCCG-GGCCCCGGTTCAGTTTTGAATG-A-TTTTGGCGCCGAGACTTCTTGAAATA
* * * * *
97337 TCTATATTCATCTAATCAAATCTCAGCCA-CATTGGATTTAA-AATTT-TTTTTACAAGCATCTA
442 TCTATATTCATCTAACCAAATCTCA-CCATAATTGAATTTAAGGATTTGTTTTTACAAGCATCTG
* * * * *
97399 AATCTTGTTTCTATTTAATTAAAAATT-A--CAGAAAAATATGAAAAATGATATTAAAAGCGTGT
506 AATCTTGTTTCGATTTAATTAGAAATTAATTCAAAAAAATATGAAAAACGATATT-AAAGCGTGA
* ** * * ** *** *
97461 AAAGTCCTCCAATCTTTTTACCGTTAAATTATATATATTTTAGGAGTATTTTATCCAAAAGTTGA
570 AAAGTCCTTCAATCTTTTTGGCGTTGAATTATATAT-TTTTATGAGTATTGCAGGTAAAAATTGA
* * *
97526 GGAAAAATTTTTCGGGTCATTTTTTAC
634 GGAAAAA-ATTTCGGGTCAATTTTTGC
* * * * ** ** * * *
97553 AAAATTTTAGCCAAAATCGTGTACGTCA-CGGTTTTTTTTTTTTTGCTAAAAATGCGTT-TCGAG
1 AAAATTTTAGCCGAAATCGTGTA-ATAATC-ATCATGGTTTTTTGGCTAAAAACGCGTTCT-GGG
* * * *
97616 GCACCAGCTCAGTTTTGCATGATTTTTGGCGCCGACACT-TCTTGAAATAACTATTTTCATCTAA
63 GCCCCAGCTCAGTTTTGCATGATTTTTGGCGCCAACACTCT-TTGAAATATCTATATTCATCTAA
* * * * * * *
97680 TAAAATCTTAGCCAAATTACATTTAAA-ATTCTTTTTTTTTTAACGAGCATTTGAGTCATATTTC
127 TCAAATCTTAGCCACATTGCATTTAAAGA----TTTGTTTTT-ACGAGCATTTGAATCTTGTTTC
* * *
97744 GATTTAATTAGAAATTAATT-TAGAAAAAATATGAAAAACGATATTAAAAGTGTCAAAAGCCCTT
187 GATTTAATTAGAAATTAATTCT-G-AAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTT
* * * * *
97808 CAATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTAT-GGCTAAAAATTGAGGAATTAT
250 CAATATTTTTGGAGTTGAATTATATATTTTTTATGAGTATTTTAGAC-AAAAATTGAGGAA-AAT
* * * *
97872 CTTTCAGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGT-TATAATC-ATCACGGTTTTTGGC
313 ATTTCAGGTCAATTTTTGTAAAATTTTAGCTGAAATCGTGTACATAATCAATCACGGTTTTTGGC
* ** * ** *
97935 TAAAAACGCGTTCCGGGACCCATTTCAATTTTGAATGAGTTTTGGCGTTGAGACTCCTTGAAATA
378 TAAAAACGCGTTCCGGGCCCCGGTTCAGTTTTGAATGA-TTTTGGCGCCGAGACTTCTTGAAATA
* *
98000 TCTATATTCATCTAACCAAATCGCAACC----------------A-TTGTTTTTATAAGCATCTG
442 TCTATATTCATCTAACCAAATCTC-ACCATAATTGAATTTAAGGATTTGTTTTTACAAGCATCTG
* * *
98048 AATCTTGTTTCGTTTTAATTAGAAATTAATTCGAAAAAAATAGGAAAAAC-AGTATTAGAAACGT
506 AATCTTGTTTCGATTTAATTAGAAATTAATTC-AAAAAAATATGAAAAACGA-TATTA-AAGCGT
* *
98112 GAAAAGCCCTTCGATCTTTTTGGCGTTGAATTATATATTTTTATGAGTATTATGACA---AAAAA
568 GAAAAGTCCTTCAATCTTTTTGGCGTTGAATTATATATTTTTATGAGTA-T-TG-CAGGTAAAAA
* *
98174 TTGAGTAAAAATATTTCGGGTCATTTTTTTTGC
630 TTGAGGAAAAA-ATTTCGGGTCA--ATTTTTGC
* * * * * * ** ** * *
98207 AAAATATTAGTCGAAATTGTGCAACATTGCGATTTTTTTTTTTTTTTTGCTAAAAACGC-TTCTA
1 AAAATTTTAGCCGAAATCGTGTAATAAT-C-A---TCATGGTTTTTTGGCTAAAAACGCGTTCTG
* * * * * * * *
98271 GGACCCTAGGTCAGTATTGCATGATTTTTTGCGTCAAGACTCTTTGAACTATCTATATTCATCTA
61 GGGCCCCAGCTCAGTTTTGCATGATTTTTGGCGCCAACACTCTTTGAAATATCTATATTCATCTA
* * * * * *
98336 ATCAAATCTCAGTGC-CATTGGATTT-AAGAATTTGTTTTTACAAGCATCTAAATCTTGTTTCGA
126 ATCAAATCTTAG-CCACATTGCATTTAAAG-ATTTGTTTTTACGAGCATTTGAATCTTGTTTCGA
* * * * * *
98399 TTTAATTAGAAATTAATTCGGAAAGAGTATGAAAAACGATATTAGAAGCGTAAAAAATACTTCAA
189 TTTAATTAGAAATTAATTCTGAAA-AATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTTCAA
* * * * * *
98464 TATTTTTGGTGTAGAATTATAT-TTTTTTATGA-TAATTTAGCAAAAAAATTGAGGTAATATCTT
253 TATTTTTGGAGTTGAATTATATATTTTTTATGAGTATTTTAG-ACAAAAATTGAGG-AAAATATT
* *
98527 TC-GGCCAATTTTTGTAAAATTTTAGCTGAAATCGTGTA-ATAATCAA-CACGATTTTTGGCTAA
316 TCAGGTCAATTTTTGTAAAATTTTAGCTGAAATCGTGTACATAATCAATCACGGTTTTTGGCTAA
* ** * * * ** ** *
98589 AAATGCGTTACAAGGCTCCAGG-TCAGTTTTGCATGATTTTTGGTGCTAAGACAACTTGAGATAT
381 AAACGCGTT-CCGGGC-CCCGGTTCAGTTTTGAATGA-TTTTGGCGCCGAGACTTCTTGAAATAT
* * * ** * ** * *
98653 CCATATTTATCCAATAAAATCTCA-GATACATTGCGTTTAAGGATTTGTTTTTACGAGCATCTAA
443 CTATATTCATCTAACCAAATCTCACCATA-ATTGAATTTAAGGATTTGTTTTTACAAGCATCTGA
* * *
98717 ATCTTATTTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAATCG---TGAAA-C-----
507 ATCTTGTTTCGATTTAATTAGAAATTAATTCA-AAAAAATATGAAAAACGATATTAAAGCGTGAA
* * * ** **
98773 AA--CCTCCAATCTTTTTGGCGTTAAATTATATATATTTCATGAGTATTTTAGCCAAAAATTGAG
571 AAGTCCTTCAATCTTTTTGGCGTTGAATTATATAT-TTTTATGAGTATTGCAGGTAAAAATTGAG
* *
98836 GAAAAAATGTTTCTGGTCATTTTTTGC
635 GAAAAAA--TTTCGGGTCAATTTTTGC
* * * * * *
98863 AAAATTTTAAG-CGAAATCGTGTATTAAGCATCACGGTTTTTTATTTTTGATAAAAACGCGTTTT
1 AAAATTTT-AGCCGAAATCGTGTAATAATCATCATGG----TT-TTTTGGCTAAAAACGCGTTCT
* ** ** * *
98927 AGGGCCCTGGCTCAGTTTTGCATGATTTTTGGCATCAAGACTCTTTGAAATATATATATTCATCT
60 GGGGCCCCAGCTCAGTTTTGCATGATTTTTGGCGCCAACACTCTTTGAAATATCTATATTCATCT
* * * * *
98992 AATCAAATTTTAGTCACATTGCATTTAAAGATTTGTTTTTACGAGTACTTGAATCTTGTTTAGAT
125 AATCAAATCTTAGCCACATTGCATTTAAAGATTTGTTTTTACGAGCATTTGAATCTTGTTTCGAT
**
99057 TTAATTAGATTTTAATTCTGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCC-TCTAAT
190 TTAATTAGAAATTAATTCTGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTTC-AAT
* *
99121 ATTTTTGGAGTTGAATTTTATATATTTTATGAGTATTTTAGACAAAAATTGAGGAAAACTATTTC
254 ATTTTTGGAGTTGAATTATATATTTTTTATGAGTATTTTAGACAAAAATTGAGGAAAA-TATTTC
* * * *
99186 TGGTCAATTTTTGTAAAATATTAGCTGAAATCGTGTACATTAGTCGAAATCACGGTTTTT-TCTT
318 AGGTCAATTTTTGTAAAATTTTAGCTGAAATCGTGTACA-TAATC--AATCACGGTTTTTGGC-T
* * * *
99250 AAAAACGCCTTCCGAGGCCCCGGTTCAGTGTTGAATGATTTGTTGCGCCGAGACTTCTTGAAACA
379 AAAAACGCGTTCCG-GGCCCCGGTTCAGTTTTGAATGATTT-TGGCGCCGAGACTTCTTGAAATA
* * * * *** *
99315 TCTATATTAATTTAACCAAATCCCATCCATAACTG-ATTTAAGGATTTG-TAAAACAAGCATTTG
442 TCTATATTCATCTAACCAAATCTCA-CCATAATTGAATTTAAGGATTTGTTTTTACAAGCATCTG
* * * *
99378 AATCATGTTTCGATTTAATTAGAAATTAATTTGAAAAATAATATGAAAAACGATACTATAAGCAT
506 AATCTTGTTTCGATTTAATTAGAAATTAA-TTCAAAAA-AATATGAAAAACGATATTA-AAGCGT
* * *
99443 GAAAATTCCTTCAATCTTTTTGGCATTGAATTATATAATTTTTATGAGTATTGCAGGTAAAACTT
568 GAAAAGTCCTTCAATCTTTTTGGCGTTGAATTATAT-ATTTTTATGAGTATTGCAGGTAAAAATT
*
99508 GAGGAAACAAATTTCGAGTCAATTTTTGC
632 GAGGAAA-AAATTTCGGGTCAATTTTTGC
* * * *
99537 AAAATTCTAGCCAAAATCGTGTAATAATCATCATGG-TTTTTGGTTAAAAACGCGTTCCGGGGCC
1 AAAATTTTAGCCGAAATCGTGTAATAATCATCATGGTTTTTTGGCTAAAAACGCGTTCTGGGGCC
* * * *
99601 CCAGCTAAGTTTTGCATGATTTTTGGCGCCAAAACTCTTTGAGATATCCATATTCATCTAATCAA
66 CCAGCTCAGTTTTGCATGATTTTTGGCGCCAACACTCTTTGAAATATCTATATTCATCTAATCAA
* * * * * * *
99666 ATCTCAGCTACATTGAATTT-AAGAATTTATTTTTACTAGTATTTGAATCTTGTTTCGATTTGAT
131 ATCTTAGCCACATTGCATTTAAAG-ATTTGTTTTTACGAGCATTTGAATCTTGTTTCGATTTAAT
*
99730 TAGAAATTAATTCTGAAAAATATGAAAAACGATGTTAAAAGCGTGAAAAGTCC-TCAA-ATCATT
195 TAGAAATTAATTCTGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTTCAATAT--TT
* * * * *
99793 TTGGCGTTAAATTATATATATTTTATGAGTA-TTTATGCCAAAAATTGACGGAAAAATTTTTCAG
258 TTGGAGTTGAATTATATATTTTTTATGAGTATTTTA-GACAAAAATTGA-GG-AAAATATTTCAG
* * * *
99857 GT-AATTTTT-TACAAATTTTTAGCTGAAATCGTGTACTATAAT-TATCACAGTTTTTGGTTGAA
320 GTCAATTTTTGTA-AAA-TTTTAGCTGAAATCGTGTAC-ATAATCAATCACGGTTTTTGGCTAAA
* * * * * *
99919 AACGCGTTTCGGGACCCCGGCTAAGTTTTGCATGAATTTTGGCACCGAGA-TTCCTTGTAATATC
382 AACGCGTTCCGGG-CCCCGGTTCAGTTTTGAATG-ATTTTGGCGCCGAGACTT-CTTGAAATATC
* * * *
99983 TATATTCATCTAATCAAATCTTAGCCA-CATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAA
444 TATATTCATCTAACCAAATCTCA-CCATAATTGAATTTAAGGATTTGTTTTTACAAGCATCTGAA
*
100047 TCTTGTTTCGATTTAATTATTATAAATTAATTCAAAAAAAT-TGGAAAAACGATATTAAAAGCGT
508 TCTTGTTTCGATTT-A--ATTAGAAATTAATTCAAAAAAATAT-GAAAAACGATATT-AAAGCGT
* * * * * * * *
100111 GAAGAGTCCTTCAATCTTTTTGGCTTTTAATTATGTA-TTCTATGAGTATTG-TGGCTAGAAATG
568 GAAAAGTCCTTCAATCTTTTTGGCGTTGAATTATATATTTTTATGAGTATTGCAGG-TAAAAATT
*
100174 GAGGAAAATATTTCGGGTCAATTTTTGC
632 GAGGAAAAAATTTCGGGTCAATTTTTGC
* *
100202 AAAATTTTAGCCGAAATTGTGTACT-ATCA-C--GGTTTTTTGGCTAAAAACGCGTTCTGGGGCC
1 AAAATTTTAGCCGAAATCGTGTAATAATCATCATGGTTTTTTGGCTAAAAACGCGTTCTGGGGCC
* * * * * * * *
100263 CCAGGTTAGTTTTGCATGATTTTTAGTGGCAACATTCCTTGAAATATCTATATTCATCTAACCAA
66 CCAGCTCAGTTTTGCATGATTTTTGGCGCCAACACTCTTTGAAATATCTATATTCATCTAATCAA
* * * *
100328 ATCTTAGCCACATTGGATTTAAGGATTT-TTTTGTACGAGCATTTGAATCATGTTTCAATTTAAT
131 ATCTTAGCCACATTGCATTTAAAGATTTGTTTT-TACGAGCATTTGAATCTTGTTTCGATTTAAT
* * * *
100392 TAGAAATTAATT-TGAAAACAAATAGGAAAAACGATATTAGAAGCGTGAGAAGCCCTTCAA-ACT
195 TAGAAATTAATTCTG--AA-AAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTTCAATA-T
* * * * * *
100455 TTTT-GACGTTGAATTATATATTTTTTATGAGTATTGT-GGCTACAGATTGAGAAAAATATTTCG
256 TTTTGGA-GTTGAATTATATATTTTTTATGAGTATTTTAGAC-AAAAATTGAGGAAAATATTTCA
* *
100518 GGTCAATTTTTGTAAAATTTTAGCCGAAATTGTGTAC
319 GGTCAATTTTTGTAAAATTTTAGCTGAAATCGTGTAC
100555 CATCATGTTT
Statistics
Matches: 2430, Mismatches: 419, Indels: 305
0.77 0.13 0.10
Matches are distributed among these distances:
648 2 0.00
649 39 0.02
650 1 0.00
651 67 0.03
652 125 0.05
653 148 0.06
654 36 0.01
655 9 0.00
656 128 0.05
657 251 0.10
658 87 0.04
659 94 0.04
660 4 0.00
661 28 0.01
662 231 0.10
663 350 0.14
664 96 0.04
665 62 0.03
666 120 0.05
667 46 0.02
668 344 0.14
669 41 0.02
670 16 0.01
673 4 0.00
674 43 0.02
675 53 0.02
676 5 0.00
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.38
Consensus pattern (659 bp):
AAAATTTTAGCCGAAATCGTGTAATAATCATCATGGTTTTTTGGCTAAAAACGCGTTCTGGGGCC
CCAGCTCAGTTTTGCATGATTTTTGGCGCCAACACTCTTTGAAATATCTATATTCATCTAATCAA
ATCTTAGCCACATTGCATTTAAAGATTTGTTTTTACGAGCATTTGAATCTTGTTTCGATTTAATT
AGAAATTAATTCTGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTTCAATATTTTTG
GAGTTGAATTATATATTTTTTATGAGTATTTTAGACAAAAATTGAGGAAAATATTTCAGGTCAAT
TTTTGTAAAATTTTAGCTGAAATCGTGTACATAATCAATCACGGTTTTTGGCTAAAAACGCGTTC
CGGGCCCCGGTTCAGTTTTGAATGATTTTGGCGCCGAGACTTCTTGAAATATCTATATTCATCTA
ACCAAATCTCACCATAATTGAATTTAAGGATTTGTTTTTACAAGCATCTGAATCTTGTTTCGATT
TAATTAGAAATTAATTCAAAAAAATATGAAAAACGATATTAAAGCGTGAAAAGTCCTTCAATCTT
TTTGGCGTTGAATTATATATTTTTATGAGTATTGCAGGTAAAAATTGAGGAAAAAATTTCGGGTC
AATTTTTGC
Found at i:100667 original size:8 final size:8
Alignment explanation
Indices: 100642--100727 Score: 73
Period size: 8 Copynumber: 10.8 Consensus size: 8
100632 GTCCTTAAAA
*
100642 GTGTGAGT
1 GTGTGTGT
* *
100650 GTGAGAGT
1 GTGTGTGT
100658 GTGTGTGT
1 GTGTGTGT
*
100666 GTGTGTCT
1 GTGTGTGT
*
100674 GTCTGTGT
1 GTGTGTGT
*
100682 GTCTGTGT
1 GTGTGTGT
* *
100690 GTCTCTGT
1 GTGTGTGT
*
100698 GTGTCTGT
1 GTGTGTGT
*
100706 GTGTGTCT
1 GTGTGTGT
*
100714 GTGTGTCT
1 GTGTGTGT
100722 GTGTGT
1 GTGTGT
100728 CTGAAAGGAG
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
8 68 1.00
ACGTcount: A:0.03, C:0.09, G:0.41, T:0.47
Consensus pattern (8 bp):
GTGTGTGT
Found at i:100669 original size:10 final size:10
Alignment explanation
Indices: 100642--100727 Score: 73
Period size: 10 Copynumber: 8.6 Consensus size: 10
100632 GTCCTTAAAA
*
100642 GTGTGAGTGT
1 GTGTGTGTGT
* *
100652 GAGAGTGTGT
1 GTGTGTGTGT
100662 GTGTGTGTGT
1 GTGTGTGTGT
* *
100672 CTGTCTGTGT
1 GTGTGTGTGT
*
100682 GTCTGTGTGT
1 GTGTGTGTGT
* *
100692 CTCTGTGTGT
1 GTGTGTGTGT
*
100702 CTGTGTGTGT
1 GTGTGTGTGT
* *
100712 CTGTGTGTCT
1 GTGTGTGTGT
100722 GTGTGT
1 GTGTGT
100728 CTGAAAGGAG
Statistics
Matches: 62, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
10 62 1.00
ACGTcount: A:0.03, C:0.09, G:0.41, T:0.47
Consensus pattern (10 bp):
GTGTGTGTGT
Found at i:100726 original size:18 final size:18
Alignment explanation
Indices: 100659--100727 Score: 111
Period size: 18 Copynumber: 3.8 Consensus size: 18
100649 TGTGAGAGTG
* *
100659 TGTGTGTGTGTGTCTGTC
1 TGTGTGTCTGTGTGTGTC
*
100677 TGTGTGTCTGTGTGTCTC
1 TGTGTGTCTGTGTGTGTC
100695 TGTGTGTCTGTGTGTGTC
1 TGTGTGTCTGTGTGTGTC
100713 TGTGTGTCTGTGTGT
1 TGTGTGTCTGTGTGT
100728 CTGAAAGGAG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 47 1.00
ACGTcount: A:0.00, C:0.12, G:0.38, T:0.51
Consensus pattern (18 bp):
TGTGTGTCTGTGTGTGTC
Found at i:100728 original size:8 final size:8
Alignment explanation
Indices: 100656--100730 Score: 87
Period size: 8 Copynumber: 8.9 Consensus size: 8
100646 GAGTGTGAGA
*
100656 GTGTGTGT
1 GTGTCTGT
*
100664 GTGTGTGT
1 GTGTCTGT
*
100672 CTGTCTGT
1 GTGTCTGT
100680 GTGTCTGT
1 GTGTCTGT
100688 GTGTCTCTGT
1 GTG--TCTGT
100698 GTGTCTGTGT
1 GTGTC--TGT
100708 GTGTCTGT
1 GTGTCTGT
100716 GTGTCTGT
1 GTGTCTGT
100724 GTGTCTG
1 GTGTCTG
100731 AAAGGAGCCC
Statistics
Matches: 60, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
8 44 0.73
10 16 0.27
ACGTcount: A:0.00, C:0.12, G:0.39, T:0.49
Consensus pattern (8 bp):
GTGTCTGT
Found at i:114132 original size:25 final size:25
Alignment explanation
Indices: 114103--114154 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
114093 ATAGTCGGAC
114103 CAAGCTGAAACTTAAATCTCTGCTA
1 CAAGCTGAAACTTAAATCTCTGCTA
114128 CAAGCTGAAACTTAAATCTCTGCTA
1 CAAGCTGAAACTTAAATCTCTGCTA
114153 CA
1 CA
114155 TTCTAATTGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.37, C:0.25, G:0.12, T:0.27
Consensus pattern (25 bp):
CAAGCTGAAACTTAAATCTCTGCTA
Found at i:120596 original size:15 final size:15
Alignment explanation
Indices: 120576--120607 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
120566 TATTAGTTGT
120576 TTGATATATTGTAAA
1 TTGATATATTGTAAA
120591 TTGATATATTGTAAA
1 TTGATATATTGTAAA
120606 TT
1 TT
120608 ATTATCTGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (15 bp):
TTGATATATTGTAAA
Found at i:120633 original size:54 final size:55
Alignment explanation
Indices: 120531--120655 Score: 207
Period size: 54 Copynumber: 2.3 Consensus size: 55
120521 GTTATAGGCA
* *
120531 AAATTGATATATTGTAAATTATTATCTAATGATTTTATTAGTTGTTTGATATATTGT
1 AAATTGATATATTGTAAATTATTATC--ATGATTTTATTAATTGTTTGATATATTAT
120588 AAATTGATATATTGTAAATTATTATC-TGATTTTATTAATTGTTTGATATATTAT
1 AAATTGATATATTGTAAATTATTATCATGATTTTATTAATTGTTTGATATATTAT
120642 AAATTGATATATTG
1 AAATTGATATATTG
120656 ATGTATTTTA
Statistics
Matches: 66, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
54 40 0.61
57 26 0.39
ACGTcount: A:0.35, C:0.02, G:0.11, T:0.52
Consensus pattern (55 bp):
AAATTGATATATTGTAAATTATTATCATGATTTTATTAATTGTTTGATATATTAT
Found at i:120655 original size:27 final size:27
Alignment explanation
Indices: 120572--120655 Score: 66
Period size: 27 Copynumber: 3.1 Consensus size: 27
120562 ATTTTATTAG
*
120572 TTGTTTGATATATTGTAAATTGATATA
1 TTGTTTGATATATTATAAATTGATATA
** ** *
120599 TTG-TAAAT-TATTATCTGATT-TTATTAA
1 TTGTTTGATATATTAT-AAATTGATA-T-A
120626 TTGTTTGATATATTATAAATTGATATA
1 TTGTTTGATATATTATAAATTGATATA
120653 TTG
1 TTG
120656 ATGTATTTTA
Statistics
Matches: 40, Mismatches: 11, Indels: 12
0.63 0.17 0.19
Matches are distributed among these distances:
25 7 0.17
26 7 0.17
27 11 0.28
28 7 0.17
29 8 0.20
ACGTcount: A:0.33, C:0.01, G:0.12, T:0.54
Consensus pattern (27 bp):
TTGTTTGATATATTATAAATTGATATA
Found at i:121208 original size:3 final size:3
Alignment explanation
Indices: 121202--121273 Score: 144
Period size: 3 Copynumber: 24.0 Consensus size: 3
121192 TATTTAAGCC
121202 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
121250 ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA
121274 TAGATTTTTA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 69 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:122931 original size:18 final size:18
Alignment explanation
Indices: 122910--122967 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
122900 TGAATATGAA
122910 GAAGTGGAAGAAGAGGAG
1 GAAGTGGAAGAAGAGGAG
** *
122928 GAAGTGGAAGTTGAGGAA
1 GAAGTGGAAGAAGAGGAG
* * *
122946 GAGGTAGAAGAAGAGGTG
1 GAAGTGGAAGAAGAGGAG
122964 GAAG
1 GAAG
122968 AAGAGGAGGA
Statistics
Matches: 30, Mismatches: 10, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.41, C:0.00, G:0.48, T:0.10
Consensus pattern (18 bp):
GAAGTGGAAGAAGAGGAG
Found at i:122937 original size:24 final size:24
Alignment explanation
Indices: 122907--122977 Score: 81
Period size: 24 Copynumber: 3.0 Consensus size: 24
122897 GGTTGAATAT
122907 GAAGAAGTGGAAGAAGAGGAGGAA
1 GAAGAAGTGGAAGAAGAGGAGGAA
** * *
122931 GTGGAAGTTGAGGAAGAGGTA-GAA
1 GAAGAAGTGGAAGAAGAGG-AGGAA
*
122955 GAAGAGGTGGAAGAAGAGGAGGA
1 GAAGAAGTGGAAGAAGAGGAGGA
122978 GAATACCGAG
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
23 1 0.03
24 34 0.94
25 1 0.03
ACGTcount: A:0.44, C:0.00, G:0.48, T:0.08
Consensus pattern (24 bp):
GAAGAAGTGGAAGAAGAGGAGGAA
Found at i:132888 original size:3 final size:3
Alignment explanation
Indices: 132882--132915 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
132872 GAAGACGACG
*
132882 ACA ACA ACA ACA ACA ACC ACA ACA ACA ACA ACA A
1 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA A
132916 GGAGACAATC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.65, C:0.35, G:0.00, T:0.00
Consensus pattern (3 bp):
ACA
Found at i:135860 original size:3 final size:3
Alignment explanation
Indices: 135854--135880 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
135844 CCTCTGTTTT
135854 TTG TTG TTG TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG
135881 AAGTTCGTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.33, T:0.67
Consensus pattern (3 bp):
TTG
Found at i:139390 original size:2 final size:2
Alignment explanation
Indices: 139383--139408 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
139373 ACTTACTACC
139383 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
139409 TTATTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:143047 original size:2 final size:2
Alignment explanation
Indices: 143040--143065 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
143030 GTTAGGTTCA
143040 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
143066 TATTATACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:146735 original size:17 final size:19
Alignment explanation
Indices: 146701--146735 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
146691 ATTTGCTAAC
146701 ATTGAGTCAAACCAAATTT
1 ATTGAGTCAAACCAAATTT
146720 ATTGA-TCAAA-CAAATT
1 ATTGAGTCAAACCAAATT
146736 AGGGTTTGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 5 0.31
19 5 0.31
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.31
Consensus pattern (19 bp):
ATTGAGTCAAACCAAATTT
Found at i:157348 original size:43 final size:43
Alignment explanation
Indices: 157263--157349 Score: 122
Period size: 43 Copynumber: 2.0 Consensus size: 43
157253 CACATACAGT
* * **
157263 CTGCTAAATTCTATTAATGGTGGATAAGATAATTTTTTTCATA
1 CTGCTAAACTCTACTAATGGTGGATAAGATAATTTTCCTCATA
157306 CTGCTAAACTCTACTAA-GGATGGATAAGATAATTTTCCTCATA
1 CTGCTAAACTCTACTAATGG-TGGATAAGATAATTTTCCTCATA
157349 C
1 C
157350 ATTATCCTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
42 2 0.05
43 37 0.95
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (43 bp):
CTGCTAAACTCTACTAATGGTGGATAAGATAATTTTCCTCATA
Found at i:166376 original size:49 final size:49
Alignment explanation
Indices: 166304--166397 Score: 188
Period size: 49 Copynumber: 1.9 Consensus size: 49
166294 CCCTAATCCA
166304 GATCTACTCTTCCTTCTTTTCTACTTCTAGTGCAATCTCATTACGGCGG
1 GATCTACTCTTCCTTCTTTTCTACTTCTAGTGCAATCTCATTACGGCGG
166353 GATCTACTCTTCCTTCTTTTCTACTTCTAGTGCAATCTCATTACG
1 GATCTACTCTTCCTTCTTTTCTACTTCTAGTGCAATCTCATTACG
166398 ACGGTTGAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.17, C:0.29, G:0.12, T:0.43
Consensus pattern (49 bp):
GATCTACTCTTCCTTCTTTTCTACTTCTAGTGCAATCTCATTACGGCGG
Found at i:187144 original size:68 final size:68
Alignment explanation
Indices: 187064--187198 Score: 270
Period size: 68 Copynumber: 2.0 Consensus size: 68
187054 ATTGTCAGCT
187064 TATCCAATGATAAACGGGAAAAATAAGGAGGTCAATCCGAAATTCAGCAAGATCACTTTCAAAAT
1 TATCCAATGATAAACGGGAAAAATAAGGAGGTCAATCCGAAATTCAGCAAGATCACTTTCAAAAT
187129 CAA
66 CAA
187132 TATCCAATGATAAACGGGAAAAATAAGGAGGTCAATCCGAAATTCAGCAAGATCACTTTCAAAAT
1 TATCCAATGATAAACGGGAAAAATAAGGAGGTCAATCCGAAATTCAGCAAGATCACTTTCAAAAT
187197 CA
66 CA
187199 GCTAAGCCTA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 67 1.00
ACGTcount: A:0.45, C:0.18, G:0.16, T:0.21
Consensus pattern (68 bp):
TATCCAATGATAAACGGGAAAAATAAGGAGGTCAATCCGAAATTCAGCAAGATCACTTTCAAAAT
CAA
Found at i:194280 original size:13 final size:13
Alignment explanation
Indices: 194262--194286 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
194252 TTGGCCGAAA
194262 CAAGTGATATATT
1 CAAGTGATATATT
194275 CAAGTGATATAT
1 CAAGTGATATAT
194287 ATTCTCAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (13 bp):
CAAGTGATATATT
Found at i:194798 original size:29 final size:29
Alignment explanation
Indices: 194756--194815 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
194746 AGGCAAATGC
194756 AAGGCTCAGATATTATTGCCATTGTTCAG
1 AAGGCTCAGATATTATTGCCATTGTTCAG
194785 AAGGCTCAGATATTATTGCCATTGTTCAG
1 AAGGCTCAGATATTATTGCCATTGTTCAG
194814 AA
1 AA
194816 CAATAGTTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (29 bp):
AAGGCTCAGATATTATTGCCATTGTTCAG
Found at i:204988 original size:2 final size:2
Alignment explanation
Indices: 204975--205033 Score: 84
Period size: 2 Copynumber: 30.0 Consensus size: 2
204965 TAATTAATTG
* * *
204975 TA TA TG TA TA TA TA TA TG TC TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
205017 TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA
205034 CCTACTATTA
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
1 1 0.02
2 50 0.98
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:205324 original size:109 final size:109
Alignment explanation
Indices: 205195--205409 Score: 358
Period size: 109 Copynumber: 2.0 Consensus size: 109
205185 TTATTATATA
* *
205195 TATTATTAATTTTGTGGTTTATTCAATTGAACCTATTAAATAAGCACACAAACCAAACAATACAA
1 TATTATTAATTGTGTGGTTTATTCAATTGAACCTATTAAATAAACACACAAACCAAACAATACAA
*
205260 AATACAATGAACTATTGGATTTAAAGAAAAATACAAGCACCTAT
66 AATACAATGAACTATTGGATTTAAAGAAAAACACAAGCACCTAT
* *
205304 TATTATTAATTGTGTTGTTTATTCAATTGAACCTATTAAATAAACACACATACCAAACAATACAA
1 TATTATTAATTGTGTGGTTTATTCAATTGAACCTATTAAATAAACACACAAACCAAACAATACAA
* * *
205369 AGTGCAATGAACTATTGGATTTAATGAAAAACACAAGCACC
66 AATACAATGAACTATTGGATTTAAAGAAAAACACAAGCACC
205410 AAATTGACTA
Statistics
Matches: 98, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
109 98 1.00
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (109 bp):
TATTATTAATTGTGTGGTTTATTCAATTGAACCTATTAAATAAACACACAAACCAAACAATACAA
AATACAATGAACTATTGGATTTAAAGAAAAACACAAGCACCTAT
Found at i:207345 original size:2 final size:2
Alignment explanation
Indices: 207338--207373 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
207328 ATAGCATTTG
207338 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
207374 TGGAACCATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:209188 original size:1 final size:1
Alignment explanation
Indices: 209182--209226 Score: 63
Period size: 1 Copynumber: 45.0 Consensus size: 1
209172 AATGGCTTGA
* * *
209182 TTTTTTTTTTCTTTTTCTTTTTCTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
209227 GCTTGTAGTC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
1 38 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (1 bp):
T
Found at i:209225 original size:12 final size:12
Alignment explanation
Indices: 209182--209226 Score: 74
Period size: 12 Copynumber: 3.8 Consensus size: 12
209172 AATGGCTTGA
209182 TTTTTTTTTTCT
1 TTTTTTTTTTCT
*
209194 TTTTCTTTTTCT
1 TTTTTTTTTTCT
209206 TTTTTTTTTT-T
1 TTTTTTTTTTCT
209217 TTTTTTTTTT
1 TTTTTTTTTT
209227 GCTTGTAGTC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
11 11 0.35
12 20 0.65
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (12 bp):
TTTTTTTTTTCT
Found at i:223457 original size:59 final size:59
Alignment explanation
Indices: 223287--223457 Score: 170
Period size: 60 Copynumber: 2.9 Consensus size: 59
223277 TTCTTTTGGC
** * * * *
223287 TAATTGCTCAAATAGACCCTTAGCGTATGCG-GAAATGCTCAATTTAA-GTCCCATGTCTT
1 TAATTGCTCAAATAGGGCCATAACGTATGCGAAAAATGCTCAA-ATAAGGT-CCATGTCTT
* * * *
223346 TAATTTGGTTAAATAGGGCCCTAACGTATG-TAAAAATGCTCAAATAAGGGTCCATG-CTTT
1 TAA-TTGCTCAAATAGGGCCATAACGTATGCGAAAAATGCTCAAATAA-GGTCCATGTC-TT
*
223406 TAATTGCTCAAATAGGGCCATAACGTTTGCGAAAAATGCTCAAATAAGGTCC
1 TAATTGCTCAAATAGGGCCATAACGTATGCGAAAAATGCTCAAATAAGGTCC
223458 TGGTGTTTGT
Statistics
Matches: 92, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
59 34 0.37
60 56 0.61
61 2 0.02
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30
Consensus pattern (59 bp):
TAATTGCTCAAATAGGGCCATAACGTATGCGAAAAATGCTCAAATAAGGTCCATGTCTT
Found at i:223630 original size:60 final size:60
Alignment explanation
Indices: 223506--223660 Score: 188
Period size: 60 Copynumber: 2.6 Consensus size: 60
223496 GGGGTTTTAT
* * * ***
223506 TTGAACATTTTCACATACATTAAGGTCCTATTTGACCAAATTAAAAGCATGGACCCTTTT
1 TTGAGCATTTTCGCATACATTAGGGTCCTATTTGACCAAATTAAAAGCATGGACCCTAAA
* *
223566 TTGAGCA-TTTCTGCATACGTTAGGGTCCTATTTGACCAAATTAAAAGCAT-GAGGCCTAAA
1 TTGAGCATTTTC-GCATACATTAGGGTCCTATTTGACCAAATTAAAAGCATGGA-CCCTAAA
* *
223626 TTGAGCATTTTCGAATACATTAGGATCCTATTTGA
1 TTGAGCATTTTCGCATACATTAGGGTCCTATTTGA
223661 ACAATTAGCC
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
59 6 0.07
60 71 0.88
61 4 0.05
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (60 bp):
TTGAGCATTTTCGCATACATTAGGGTCCTATTTGACCAAATTAAAAGCATGGACCCTAAA
Found at i:224773 original size:162 final size:153
Alignment explanation
Indices: 224487--224804 Score: 413
Period size: 162 Copynumber: 2.0 Consensus size: 153
224477 TTTGATTTTG
*
224487 TTCCTTGTGCTTTCGATTTCTCTGGTTTTAATTTTCTTGTGATTGCGATTGGTGATATATTTTGC
1 TTCCTTGTGCTTTCGATTTCTATGGTTTTAATTTTCTTGTGATTGCGATTGGTGATATATTTTGC
* * *
224552 AATCCCTTTAGGATTAGGATTTGCATTTTTGTTTCCTTGGCCTTTGTTTACATAGTAGTACTACT
66 AATCCCTCTAGGATTAAGATTTGCATTTTTGTTTCCTTGGCCTTTGTTTACACAGTAGTACTACT
*
224617 TTTCCATTTTGATTTTAGACTAA
131 TTTCCATTTTGATTTTAGAATAA
* * *
224640 TTCCTTGTGCTCTT-GATTTCTATTGTTTTAGGTTTTCTTGTGATTGTGATTGGTGATATATCTT
1 TTCCTTGTGCT-TTCGATTTCTATGGTTTTA-ATTTTCTTGTGATTGCGATTGGTGATATA--TT
** ** *
224704 GACTTGTGATCCCTCTAGGATTAAGATTTGTTTTTTTTTTGTTTCCTTGGCCTTTGTTTGCACAG
62 ---TTGCAATCCCTCTAGGATTAAGATTTG---CATTTTTGTTTCCTTGGCCTTTGTTTACACAG
*
224769 TAGTATTACTTTTCCATTTTGATTTTAGAATAA
121 TAGTACTACTTTTCCATTTTGATTTTAGAATAA
224802 TTC
1 TTC
224805 TTGATTGAAA
Statistics
Matches: 141, Mismatches: 14, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
153 25 0.18
154 29 0.21
156 2 0.01
159 23 0.16
162 62 0.44
ACGTcount: A:0.17, C:0.14, G:0.17, T:0.52
Consensus pattern (153 bp):
TTCCTTGTGCTTTCGATTTCTATGGTTTTAATTTTCTTGTGATTGCGATTGGTGATATATTTTGC
AATCCCTCTAGGATTAAGATTTGCATTTTTGTTTCCTTGGCCTTTGTTTACACAGTAGTACTACT
TTTCCATTTTGATTTTAGAATAA
Found at i:232988 original size:31 final size:30
Alignment explanation
Indices: 232930--232988 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
232920 GTTTCTCTTA
*
232930 AAAAAAAAAATTTTTGTTTGCGTTTTTTCT
1 AAAAAAAAAATTTTTGTTTGCGCTTTTTCT
**
232960 AAAAAAAAAATTTGTTGTTTTTGCTTTTT
1 AAAAAAAAAATTT-TTGTTTGCGCTTTTT
232989 TAATTTTTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 13 0.52
31 12 0.48
ACGTcount: A:0.34, C:0.05, G:0.10, T:0.51
Consensus pattern (30 bp):
AAAAAAAAAATTTTTGTTTGCGCTTTTTCT
Found at i:233003 original size:21 final size:23
Alignment explanation
Indices: 232968--233011 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
232958 CTAAAAAAAA
*
232968 AATTTGTTGTTTTTGC-TTTTTT
1 AATTTGTTGTGTTTGCGTTTTTT
232990 AATTT-TTGTGTTTGCGTTTTTT
1 AATTTGTTGTGTTTGCGTTTTTT
233012 GAAAAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.09, C:0.05, G:0.16, T:0.70
Consensus pattern (23 bp):
AATTTGTTGTGTTTGCGTTTTTT
Found at i:236270 original size:21 final size:21
Alignment explanation
Indices: 236245--236299 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
236235 CGGCCATTCA
**
236245 CCGTGCCACCACCGGTTAAGC
1 CCGTGCCACCACCGGCCAAGC
*
236266 CCGTGCCACCACCGGCCATGC
1 CCGTGCCACCACCGGCCAAGC
*
236287 CCGTGCCATCACC
1 CCGTGCCACCACC
236300 ATTCCATGCC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.16, C:0.49, G:0.22, T:0.13
Consensus pattern (21 bp):
CCGTGCCACCACCGGCCAAGC
Found at i:238774 original size:11 final size:12
Alignment explanation
Indices: 238748--238775 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
238738 AGATTATTTC
238748 TTTTCTTCTAGT
1 TTTTCTTCTAGT
238760 TTTTCTTCTAGT
1 TTTTCTTCTAGT
238772 TTTT
1 TTTT
238776 AGGCAAGGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.14, G:0.07, T:0.71
Consensus pattern (12 bp):
TTTTCTTCTAGT
Found at i:247186 original size:22 final size:22
Alignment explanation
Indices: 247160--247768 Score: 160
Period size: 22 Copynumber: 27.8 Consensus size: 22
247150 ATTACACTAT
* * *
247160 TTTTGATGATCTCCTTATGAAA
1 TTTTGATAACCTCCTAATGAAA
*
247182 TTTTGATAACCTTCTAATGAAA
1 TTTTGATAACCTCCTAATGAAA
* * *
247204 TTTTGATAACAATACT-ATG-GA
1 TTTTGATAAC-CTCCTAATGAAA
* ** *
247225 TTTTCGAGAACCTTTTTAT-AAA
1 TTTT-GATAACCTCCTAATGAAA
** * *
247247 TATTTTTTAACCTTCTTATGAAA
1 T-TTTGATAACCTCCTAATGAAA
* * *
247270 TTATGTTAACCTCACTAA-GGAA
1 TTTTGATAACCTC-CTAATGAAA
247292 TTTTGA-AGACCTCACT-ATGAAA
1 TTTTGATA-ACCTC-CTAATGAAA
* *
247314 TTTTGATAACTTCCCAATGAAA
1 TTTTGATAACCTCCTAATGAAA
* *
247336 TTTTGATAACCAACACT-ATGAGA
1 TTTTGATAACC-TC-CTAATGAAA
* *
247359 TGTTGATAACCT-CTATATGATA
1 TTTTGATAACCTCCTA-ATGAAA
* *** *
247381 TATTGATAACCAAATTATGAAA
1 TTTTGATAACCTCCTAATGAAA
* * *
247403 ATTTAAAAACCTCC-ATATG-AA
1 TTTTGATAACCTCCTA-ATGAAA
* * *
247424 TTGTT-AGTAATCACACT-TTGAAA
1 TT-TTGA-TAACCTC-CTAATGAAA
* *
247447 TTTTGATAATCACACT-ATGAAA
1 TTTTGATAACCTC-CTAATGAAA
* *
247469 TTGTGATAACCCCGCT-ATGAAA
1 TTTTGATAACCTC-CTAATGAAA
* *
247491 TTTTGATAAATCTTCCT-ATAAAA
1 TTTTGAT-AA-CCTCCTAATGAAA
* * *
247514 TTTTGATAAACATCCTTATAAAA
1 TTTTGAT-AACCTCCTAATGAAA
*
247537 TTTTGATAACCTCCTTATGAAA
1 TTTTGATAACCTCCTAATGAAA
* *
247559 TCTTGATAA----CT-A-CAAA
1 TTTTGATAACCTCCTAATGAAA
* **
247575 TTGTGATAACCTCACT-ATGATTT
1 TTTTGATAACCTC-CTAATGA-AA
* * *
247598 TTTTGATAACCTCATTATGAAT
1 TTTTGATAACCTCCTAATGAAA
* * *
247620 TTTTGTTAATCTCCTTATGAAA
1 TTTTGATAACCTCCTAATGAAA
* * **
247642 TTTTGATCTACATAGT-ATGAAA
1 TTTTGAT-AACCTCCTAATGAAA
*
247664 TTTTGATAACC-CTCTTATGAAA
1 TTTTGATAACCTC-CTAATGAAA
* * *
247686 TATTGA-AAACTAAACT-ATGAAA
1 TTTTGATAACCT--CCTAATGAAA
*
247708 TTTTGATATCCTCCT--TGAAA
1 TTTTGATAACCTCCTAATGAAA
* *
247728 TTTTGATTA-CTCCATAATAAAA
1 TTTTGATAACCTCC-TAATGAAA
* *
247750 GTTTAATAACCTTCCTAAT
1 TTTTGATAACC-TCCTAAT
247769 TTAATAACCA
Statistics
Matches: 441, Mismatches: 100, Indels: 91
0.70 0.16 0.14
Matches are distributed among these distances:
16 10 0.02
17 1 0.00
18 2 0.00
19 4 0.01
20 15 0.03
21 25 0.06
22 280 0.63
23 98 0.22
24 6 0.01
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (22 bp):
TTTTGATAACCTCCTAATGAAA
Found at i:247604 original size:23 final size:23
Alignment explanation
Indices: 247578--247623 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
247568 CTACAAATTG
*
247578 TGATAACCTCACTATGATTTTTT
1 TGATAACCTCACTATGAATTTTT
*
247601 TGATAACCTCATTATGAATTTTT
1 TGATAACCTCACTATGAATTTTT
247624 GTTAATCTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.28, C:0.15, G:0.09, T:0.48
Consensus pattern (23 bp):
TGATAACCTCACTATGAATTTTT
Found at i:247888 original size:22 final size:22
Alignment explanation
Indices: 247840--248256 Score: 207
Period size: 22 Copynumber: 18.9 Consensus size: 22
247830 AATCACATTT
* *
247840 TGAAAATTTGATAA-CTCTTTA
1 TGAAATTTTGATAACCTCTCTA
247861 TGAAATTTTGATAACCTCTCTA
1 TGAAATTTTGATAACCTCTCTA
* * * *
247883 TAAAATTTTGTTGACCCCTCTA
1 TGAAATTTTGATAACCTCTCTA
*
247905 TGAAATTTTGATAA--TCACATGA
1 TGAAATTTTGATAACCTCTC-T-A
* * *
247927 TGTAATTTTGATAACCTCGCTT
1 TGAAATTTTGATAACCTCTCTA
** *
247949 TGAAATTTTGATAACAACACTA
1 TGAAATTTTGATAACCTCTCTA
* *
247971 TGAAATTTTAATAATCT-TCCTA
1 TGAAATTTTGATAACCTCT-CTA
*
247993 T-AAATTTTGATAATCCGATCTCTG
1 TGAAATTTTGATAA-CC--TCTCTA
* * *
248017 T-AAATTTCGATAATCACTCTA
1 TGAAATTTTGATAACCTCTCTA
*
248038 TGAGA-TTTGATAACCT-TCTA
1 TGAAATTTTGATAACCTCTCTA
* *
248058 TCAAATTTTGGT-A-CTC-CTTA
1 TGAAATTTTGATAACCTCTC-TA
* *
248078 TGAAATTGAGACTTTTATAATCT-TCATA
1 TGAAA-T-----TTTGATAACCTCTC-TA
* *
248106 TGAAATTTTGATAACCACACTA
1 TGAAATTTTGATAACCTCTCTA
** * *
248128 AAAAATTTTGATAACCACACTA
1 TGAAATTTTGATAACCTCTCTA
* *
248150 TGAAATTTTGATAACCTCCCCA
1 TGAAATTTTGATAACCTCTCTA
* *
248172 TGAAATATT-AGTAGCCTC-CTTA
1 TGAAATTTTGA-TAACCTCTC-TA
* * * *
248194 TGAAATTATGCTAACCACACTA
1 TGAAATTTTGATAACCTCTCTA
*
248216 TGAAATTCTT-ATAACCTCGCTA
1 TGAAATT-TTGATAACCTCTCTA
* *
248238 TGACATTTTGATAATCTCT
1 TGAAATTTTGATAACCTCT
248257 TTGATAACCT
Statistics
Matches: 298, Mismatches: 68, Indels: 59
0.70 0.16 0.14
Matches are distributed among these distances:
19 3 0.01
20 16 0.05
21 48 0.16
22 191 0.64
23 5 0.02
24 18 0.06
25 1 0.00
26 4 0.01
27 2 0.01
28 10 0.03
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (22 bp):
TGAAATTTTGATAACCTCTCTA
Found at i:247978 original size:44 final size:42
Alignment explanation
Indices: 247815--248442 Score: 154
Period size: 44 Copynumber: 14.4 Consensus size: 42
247805 TGAAATACCA
* * * * *
247815 CTATAAAATTTTGGTAATCACATTTTGAAAATTTGATAA-CTC
1 CTATGAAATTTTGATAA-CACACTATGAAATTTTGATAACCTC
* * * * * * *
247857 TTTATGAAATTTTGATAACCTCTCTATAAAATTTTGTTGACCCC
1 -CTATGAAATTTTGATAA-CACACTATGAAATTTTGATAACCTC
*
247901 TCTATGAAATTTTGATAATCACA-TGATGTAATTTTGATAACCTC
1 -CTATGAAATTTTGATAA-CACACT-ATGAAATTTTGATAACCTC
* * *
247945 GCTTTGAAATTTTGATAACAACACTATGAAATTTTAATAATCTTC
1 -CTATGAAATTTTGATAAC-ACACTATGAAATTTTGATAA-CCTC
* *
247990 CTAT-AAATTTTGATAATC-CGATCTCTGTAAATTTCGATAATCACT-
1 CTATGAAATTTTGATAA-CAC-A-CTATG-AAATTTTGATAA-C-CTC
* * * *
248035 CTATGAGA-TTTGATAAC-CTTCTATCAAATTTTGGT-A-CTC
1 CTATGAAATTTTGATAACAC-ACTATGAAATTTTGATAACCTC
* * *
248074 CTTATGAAATTGAGACTTTTATAATCTTCA-TATGAAATTTTGATAACCAC
1 C-TATGAAA-T-----TTTGATAA-C-ACACTATGAAATTTTGATAACCTC
**
248124 ACTAAAAAATTTTGATAACCACACTATGAAATTTTGATAACCTCC
1 -CTATGAAATTTTGATAA-CACACTATGAAATTTTGATAACCT-C
* * * * * * *
248169 CCATGAAATATT-AGTAGC-CTCCTTATGAAATTATGCTAACCAC
1 CTATGAAATTTTGA-TAACAC-AC-TATGAAATTTTGATAACCTC
* * *
248212 ACTATGAAATTCTT-ATAACCTCGCTATGACATTTTGATAA--T-
1 -CTATGAAATT-TTGATAA-CACACTATGAAATTTTGATAACCTC
* * * * *
248253 C--T----CTTTGATAAC-CTTTCTATAAAATTGTGATAACCAC
1 CTATGAAATTTTGATAACAC--ACTATGAAATTTTGATAACCTC
** * * *
248290 ACTATGAAATTTCAATAAC-CTTCCTAAGAAATTTTAATAACCTGATC
1 -CTATGAAATTTTGATAACAC--ACTATGAAATTTTGATAACC---TC
* * *
248337 CTATGAAATTTTGGTAACTACACTATTAAATTTTGATAACCTT
1 CTATGAAATTTTGATAAC-ACACTATGAAATTTTGATAACCTC
* * * * *
248380 CTCATTAAATTTTGATAACTTTCA-TATGAAATTTTGGTTACCAC
1 CT-ATGAAATTTTGATAAC--ACACTATGAAATTTTGATAACCTC
*
248424 ACTATGGAATTTTGATAAC
1 -CTATGAAATTTTGATAAC
248443 CTCCTCATGA
Statistics
Matches: 428, Mismatches: 101, Indels: 111
0.67 0.16 0.17
Matches are distributed among these distances:
32 1 0.00
33 3 0.01
34 19 0.04
38 4 0.01
39 1 0.00
40 8 0.02
41 1 0.00
42 10 0.02
43 54 0.13
44 220 0.51
45 39 0.09
46 35 0.08
47 8 0.02
48 14 0.03
49 2 0.00
50 8 0.02
51 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.39
Consensus pattern (42 bp):
CTATGAAATTTTGATAACACACTATGAAATTTTGATAACCTC
Found at i:248368 original size:68 final size:66
Alignment explanation
Indices: 248269--248489 Score: 187
Period size: 68 Copynumber: 3.3 Consensus size: 66
248259 GATAACCTTT
* * *
248269 CTATAAAATTGTGATAACCACACTATGAAATTTCAATAACCTTC-CTAAGAAATTTTAATAACCT
1 CTATGAAATTTTGGTAACCACACTATGAAATTTCAATAACCTTCTC-AAGAAATTTTAATAA-CT
248333 GATC
64 -ATC
* * ** ** * *
248337 CTATGAAATTTTGGTAACTACACTATTAAATTTTGATAACCTTCTCATTAAATTTTGATAACTTT
1 CTATGAAATTTTGGTAACCACACTATGAAATTTCAATAACCTTCTCAAGAAATTTTAATAACTAT
248402 C
66 C
* * * ** * * * * *
248403 ATATGAAATTTTGGTTACCACACTATGGAATTTTGATAACCTCCTCATG--ATTATAAAAACCAT
1 CTATGAAATTTTGGTAACCACACTATGAAATTTCAATAACCTTCTCAAGAAATTTTAATAACTAT
248466 C
66 C
* *
248467 ATATGAAATTTTGATAACCACAC
1 CTATGAAATTTTGGTAACCACAC
248490 AAAGACAAGA
Statistics
Matches: 127, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
64 31 0.24
66 44 0.35
67 2 0.02
68 49 0.39
69 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.36
Consensus pattern (66 bp):
CTATGAAATTTTGGTAACCACACTATGAAATTTCAATAACCTTCTCAAGAAATTTTAATAACTAT
C
Found at i:248485 original size:22 final size:22
Alignment explanation
Indices: 248256--248486 Score: 118
Period size: 22 Copynumber: 10.5 Consensus size: 22
248246 TGATAATCTC
* *
248256 TTTGATAACCTTTC-TATAAAAT
1 TTTGATAACC-ATCATATGAAAT
*
248278 TGTGATAACCA-CACTATGAAAT
1 TTTGATAACCATCA-TATGAAAT
** * * *
248300 TTCAATAACCTTCCTAAGAAAT
1 TTTGATAACCATCATATGAAAT
* *
248322 TTTAATAACCTGATCCTATGAAAT
1 TTTGATAACC--ATCATATGAAAT
* * *
248346 TTTGGTAACTA-CACTATTAAAT
1 TTTGATAACCATCA-TATGAAAT
* *
248368 TTTGATAACCTTC-TCATTAAAT
1 TTTGATAACCATCAT-ATGAAAT
**
248390 TTTGATAACTTTCATATGAAAT
1 TTTGATAACCATCATATGAAAT
* * *
248412 TTTGGTTACCA-CACTATGGAAT
1 TTTGATAACCATCA-TATGAAAT
*
248434 TTTGATAACC-TCCTCATG--AT
1 TTTGATAACCATCAT-ATGAAAT
* * *
248454 TATAAAAACCATCATATGAAAT
1 TTTGATAACCATCATATGAAAT
248476 TTTGATAACCA
1 TTTGATAACCA
248487 CACAAAGACA
Statistics
Matches: 157, Mismatches: 37, Indels: 30
0.70 0.17 0.13
Matches are distributed among these distances:
20 13 0.08
21 8 0.05
22 116 0.74
23 3 0.02
24 17 0.11
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.38
Consensus pattern (22 bp):
TTTGATAACCATCATATGAAAT
Found at i:248842 original size:44 final size:44
Alignment explanation
Indices: 248789--248873 Score: 154
Period size: 44 Copynumber: 1.9 Consensus size: 44
248779 AAAATTATAC
248789 TAAATTTTAATAATGGT-AATTTAGAAATATATTTGAAAAAAAAA
1 TAAATTTTAATAAT-GTCAATTTAGAAATATATTTGAAAAAAAAA
248833 TAAATTTTAATAATGTCAATTTAGAAATATATTTGAAAAAA
1 TAAATTTTAATAATGTCAATTTAGAAATATATTTGAAAAAA
248874 GGGTACAATA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
43 2 0.05
44 38 0.95
ACGTcount: A:0.53, C:0.01, G:0.08, T:0.38
Consensus pattern (44 bp):
TAAATTTTAATAATGTCAATTTAGAAATATATTTGAAAAAAAAA
Found at i:249484 original size:23 final size:24
Alignment explanation
Indices: 249450--249495 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 24
249440 GGATAATCTA
249450 AATTTCCATTATTTTAATAGTGGG
1 AATTTCCATTATTTTAATAGTGGG
249474 AATTT-CATTATTTTAATAGTGG
1 AATTTCCATTATTTTAATAGTGG
249496 AGTATTATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 17 0.77
24 5 0.23
ACGTcount: A:0.30, C:0.07, G:0.15, T:0.48
Consensus pattern (24 bp):
AATTTCCATTATTTTAATAGTGGG
Found at i:252121 original size:42 final size:42
Alignment explanation
Indices: 252058--252148 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
252048 AGTAACAATT
*
252058 AATATTAGCTTTATTTAGATGAATTATCTAGAAATGGAGTAG
1 AATATTAGCTTTATTTAGATGAATTACCTAGAAATGGAGTAG
* * * *
252100 AATATTAGTTTTATTTTGATGAATTACCTAGAGATGTAGTAG
1 AATATTAGCTTTATTTAGATGAATTACCTAGAAATGGAGTAG
252142 AAT-TTAG
1 AATATTAG
252149 GTAATGTACT
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
41 4 0.09
42 40 0.91
ACGTcount: A:0.36, C:0.04, G:0.19, T:0.41
Consensus pattern (42 bp):
AATATTAGCTTTATTTAGATGAATTACCTAGAAATGGAGTAG
Found at i:252397 original size:16 final size:17
Alignment explanation
Indices: 252354--252397 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 17
252344 AATTTACTTC
252354 TAATAATTATTTTAGATTA
1 TAAT-ATTA-TTTAGATTA
252373 TAATA-TATTTA-ATTA
1 TAATATTATTTAGATTA
252388 TAATATTATT
1 TAATATTATT
252398 ATTTATAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 9 0.38
16 8 0.33
17 2 0.08
18 1 0.04
19 4 0.17
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (17 bp):
TAATATTATTTAGATTA
Found at i:252727 original size:45 final size:45
Alignment explanation
Indices: 252675--252798 Score: 212
Period size: 45 Copynumber: 2.8 Consensus size: 45
252665 AATTCTACTT
252675 CATCTCTAGGTAATTCATCAAAATAAAGCTAATAATATACTCCTC
1 CATCTCTAGGTAATTCATCAAAATAAAGCTAATAATATACTCCTC
* * *
252720 TATCTCTAGGTAATTCATCAAAATAAAGCTAATATTCTACTCCTC
1 CATCTCTAGGTAATTCATCAAAATAAAGCTAATAATATACTCCTC
*
252765 CATCTCTAGGTAATTCATCAAAATAAACCTAATA
1 CATCTCTAGGTAATTCATCAAAATAAAGCTAATA
252799 TTAATTGTTG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 74 1.00
ACGTcount: A:0.40, C:0.22, G:0.06, T:0.32
Consensus pattern (45 bp):
CATCTCTAGGTAATTCATCAAAATAAAGCTAATAATATACTCCTC
Found at i:252799 original size:45 final size:45
Alignment explanation
Indices: 252660--252800 Score: 209
Period size: 45 Copynumber: 3.2 Consensus size: 45
252650 AAAGAGTATT
252660 ACCTAA-ATTCTACT--T-CATCTCTAGGTAATTCATCAAAATAA
1 ACCTAATATTCTACTCCTCCATCTCTAGGTAATTCATCAAAATAA
* * * *
252701 AGCTAATAATATACTCCTCTATCTCTAGGTAATTCATCAAAATAA
1 ACCTAATATTCTACTCCTCCATCTCTAGGTAATTCATCAAAATAA
*
252746 AGCTAATATTCTACTCCTCCATCTCTAGGTAATTCATCAAAATAA
1 ACCTAATATTCTACTCCTCCATCTCTAGGTAATTCATCAAAATAA
252791 ACCTAATATT
1 ACCTAATATT
252801 AATTGTTGTT
Statistics
Matches: 88, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
41 5 0.06
42 6 0.07
44 1 0.01
45 76 0.86
ACGTcount: A:0.38, C:0.22, G:0.06, T:0.34
Consensus pattern (45 bp):
ACCTAATATTCTACTCCTCCATCTCTAGGTAATTCATCAAAATAA
Done.