Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020397.1 Corchorus olitorius cultivar O-4 contig20430, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90960

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
757--816
29
2.0
30
90
3
95
25
16
13
45
1.84
965--1021
29
1.9
30
85
3
80
50
10
8
29
1.67
1595--1663
28
2.5
28
86
9
97
31
13
11
43
1.79
4139--4167
15
1.9
15
100
0
58
58
0
13
27
1.36
14444--14489
22
2.0
23
84
12
60
28
0
13
58
1.35
15772--15868
45
2.2
45
88
1
142
36
5
21
37
1.76
17729--17772
23
1.9
23
100
0
88
25
22
0
52
1.48
18476--18514
20
2.0
20
100
0
78
15
10
17
56
1.66
19816--19847
16
2.0
16
100
0
64
25
50
12
12
1.75
19817--19853
16
2.2
16
90
4
56
29
48
10
10
1.72
21804--21846
2
19.5
2
82
17
50
44
0
9
46
1.35
21807--21850
7
6.4
7
87
12
65
45
0
11
43
1.40
21804--21850
19
2.6
17
87
12
60
44
0
10
44
1.38
23324--24649
334
4.0
327
78
9
1165
37
14
14
32
1.87
25002--25053
15
3.3
16
82
15
56
55
1
0
42
1.10
25303--25331
2
14.5
2
100
0
58
51
0
0
48
1.00
27210--27452
120
2.0
120
98
0
468
28
28
6
35
1.83
27386--27484
49
2.0
49
94
0
171
38
24
7
30
1.82
27552--27579
14
2.0
14
100
0
56
28
21
21
28
1.99
29470--29516
6
8.2
6
88
6
53
38
8
0
53
1.32
29605--29859
127
2.0
127
93
2
431
38
10
1
49
1.47
30944--30987
19
2.4
18
85
7
61
56
2
0
40
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30944--30982
19
2.1
19
90
4
62
61
2
0
35
1.10
32126--32152
12
2.2
12
100
0
54
59
0
7
33
1.25
35412--35465
22
2.4
23
78
9
67
48
1
3
46
1.30
35434--35479
24
1.9
24
90
0
74
47
4
2
45
1.34
36006--36335
178
1.9
178
88
3
504
34
14
16
34
1.89
41945--41991
23
2.0
23
84
8
60
72
4
10
12
1.25
41967--42013
19
2.5
19
82
6
60
74
2
10
12
1.16
43244--43329
31
2.9
28
81
13
93
31
20
12
34
1.91
55939--56043
53
2.0
52
92
5
176
40
25
11
21
1.87
61143--61222
39
2.1
39
97
0
151
38
7
15
38
1.75
62447--62481
1
35.0
1
94
0
61
0
2
0
97
0.19
62441--62500
8
7.4
8
86
7
68
0
11
0
86
0.54
62447--62498
10
4.8
11
88
9
72
0
7
0
90
0.42
70606--70665
30
2.0
30
100
0
120
26
20
23
30
1.98
83649--83738
29
3.2
29
87
3
121
22
31
16
30
1.96
86817--86867
20
2.6
20
87
3
77
7
31
7
52
1.59

Tables:   1

The End!