Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020398.1 Corchorus olitorius cultivar O-4 contig20431, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93716

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2573--2760
94
2.0
94
97
2
360
51
6
12
29
1.64
3116--3293
90
2.0
89
93
1
302
49
7
6
37
1.56
6129--6206
40
1.9
41
94
2
140
21
0
24
53
1.46
6903--6948
21
2.1
22
92
4
76
58
4
0
36
1.18
10783--10819
2
18.5
2
94
0
65
48
0
2
48
1.15
22887--22924
2
19.0
2
100
0
76
50
0
0
50
1.00
24276--24624
174
2.0
174
94
1
619
30
24
15
29
1.95
29028--29083
29
1.9
29
100
0
112
33
17
16
32
1.92
30890--31148
128
2.0
128
93
0
446
20
18
37
22
1.94
31256--31355
49
2.0
49
98
0
191
11
14
37
38
1.81
36165--36263
31
3.4
31
66
18
95
31
12
13
43
1.80
36159--36266
55
2.0
55
98
0
207
31
11
12
44
1.78
40604--40640
19
2.0
19
94
5
67
32
0
0
67
0.91
40610--40651
19
2.2
19
86
0
57
38
2
0
59
1.10
41745--41817
35
2.1
35
92
0
119
35
9
17
36
1.83
42766--42798
17
1.9
17
100
0
66
6
27
0
66
1.15
50944--51010
33
2.0
33
100
0
134
38
8
31
20
1.84
55017--55104
33
2.5
33
87
10
115
51
13
5
29
1.64
65560--65630
29
2.4
29
83
6
90
25
19
12
42
1.87
65578--65636
29
2.0
29
83
6
75
23
23
11
40
1.88
66460--66518
22
2.9
20
82
7
66
52
3
18
25
1.61
67497--67585
31
2.9
31
87
11
130
29
3
30
37
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83275--84053
334
2.3
331
83
6
968
37
15
13
33
1.87
84052--84134
2
40.5
2
77
17
82
4
2
44
48
1.37
92165--92215
17
3.1
16
86
8
66
35
21
21
21
1.96

Tables:   1

The End!