Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020399.1 Corchorus olitorius cultivar O-4 contig20432, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49236

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5923--5956
17
2.0
17
100
0
68
11
0
17
70
1.16
7157--7228
29
2.4
29
82
13
85
18
11
29
41
1.84
15073--15252
45
4.0
45
93
0
315
17
41
11
30
1.84
15333--15599
30
8.9
30
87
1
347
25
34
14
25
1.94
37766--37808
2
22.0
2
81
13
54
51
0
2
46
1.13
38159--38212
18
3.3
18
65
24
55
51
0
1
46
1.11
38155--38220
31
2.1
31
100
0
132
51
0
3
45
1.16
41309--41627
160
2.0
158
88
1
467
38
18
14
27
1.90
44736--44810
29
2.4
32
84
8
102
38
16
26
18
1.91
47913--47953
21
1.9
22
85
5
57
9
17
29
43
1.80
48844--48876
7
4.9
7
85
7
50
57
0
30
12
1.35
49196--49231
1
36.0
1
88
0
54
0
2
0
94
0.22

Tables:   1

The End!