Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020401.1 Corchorus olitorius cultivar O-4 contig20434, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76311

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--2819
330
8.5
327
79
6
2608
32
13
16
36
1.88
3--2809
331
8.4
328
79
7
2447
32
13
16
36
1.88
10068--10144
35
2.1
37
88
7
113
42
16
9
31
1.80
31589--31615
14
1.9
14
100
0
54
44
7
0
48
1.31
39043--39069
10
2.7
10
100
0
54
62
18
0
18
1.32
41645--41670
13
2.0
13
100
0
52
38
0
30
30
1.58
46125--46150
13
2.0
13
100
0
52
38
0
30
30
1.58
47161--47198
19
2.0
19
94
0
67
34
21
13
31
1.91
53202--53240
21
2.0
20
85
10
53
41
7
10
41
1.68
56887--56954
32
2.0
34
86
8
95
27
10
10
51
1.68
65949--65991
4
10.8
4
100
0
86
76
0
0
23
0.78
67952--67990
18
2.2
18
100
0
78
30
10
15
43
1.80
73601--73644
22
2.0
22
100
0
88
18
40
9
31
1.81
76247--76308
22
2.8
23
78
7
74
77
16
4
1
1.02

Tables:   1

The End!