Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020403.1 Corchorus olitorius cultivar O-4 contig20436, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55014

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1864--2322
31
14.8
31
84
0
551
13
22
27
36
1.92
1868--2322
62
7.4
62
91
0
615
13
21
27
37
1.91
1861--2327
93
5.0
93
87
0
621
13
22
27
36
1.91
3239--3271
14
2.4
14
90
10
50
0
3
15
81
0.80
17787--17815
1
29.0
1
100
0
58
100
0
0
0
0.00
17945--17987
21
2.0
21
100
0
86
27
23
23
25
2.00
26211--26237
12
2.2
12
100
0
54
25
0
14
59
1.36
26896--26994
3
30.7
3
82
15
110
60
0
0
39
0.97
26896--26995
7
14.9
7
86
11
131
60
0
0
40
0.97
30184--30247
32
2.0
32
87
9
94
51
9
10
28
1.68
30184--30247
34
1.9
32
87
6
92
51
9
10
28
1.68
39124--39164
21
2.0
21
85
9
57
58
12
7
21
1.58
42876--42910
18
1.9
18
88
0
52
37
22
20
20
1.95
43627--43666
18
2.2
19
82
8
57
45
10
15
30
1.78
49695--49726
15
2.1
15
100
0
64
25
12
6
56
1.59
51960--51996
19
1.9
19
94
0
65
16
35
13
35
1.88
52459--52519
30
2.0
30
87
6
88
24
19
11
44
1.84
52741--52789
3
16.3
3
100
0
98
32
0
0
67
0.91
53941--53989
25
2.0
25
100
0
98
34
20
32
12
1.90
54972--55009
19
2.0
19
100
0
76
26
21
5
47
1.71

Tables:   1

The End!