Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020404.1 Corchorus olitorius cultivar O-4 contig20437, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75467

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
727--753
13
2.1
13
100
0
54
55
14
0
29
1.40
4875--4912
19
2.0
19
100
0
76
26
21
5
47
1.71
5692--5752
32
1.9
32
86
6
88
47
6
19
26
1.74
14201--14256
21
2.8
20
81
5
69
41
8
16
33
1.79
26037--26061
13
1.9
13
100
0
50
88
0
8
4
0.64
27293--27404
55
2.0
55
94
0
197
33
19
21
25
1.97
28025--28260
129
1.8
129
94
0
418
40
12
14
32
1.84
28359--28389
2
16.0
2
93
6
55
48
0
0
51
1.00
30494--30536
2
21.5
2
86
9
52
46
2
0
51
1.13
35334--35372
12
3.2
12
85
3
51
28
53
12
5
1.60
35756--36157
202
2.0
199
87
1
579
32
15
16
34
1.91
41783--41822
21
1.9
21
89
0
62
32
17
12
37
1.87
42361--42415
11
4.8
11
77
4
56
81
1
14
1
0.85
42361--42415
23
2.4
23
84
6
67
81
1
14
1
0.85
47945--48006
26
2.6
22
71
22
54
20
16
8
54
1.67
51846--53202
323
4.2
324
85
4
1699
36
16
15
31
1.90
51527--53202
647
2.6
645
85
4
1977
36
16
14
31
1.89
61470--61540
29
2.4
30
83
2
90
47
12
18
21
1.81
63117--63146
1
30.0
1
100
0
60
0
0
0
100
0.00
68663--68687
13
1.9
13
100
0
50
52
0
0
48
1.00
68934--69335
22
18.3
22
69
11
118
34
15
10
38
1.83
69081--69197
45
2.6
45
78
6
114
40
16
11
32
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69445--69664
22
10.0
22
73
9
121
33
15
9
41
1.79
69425--69587
89
1.8
89
81
2
202
34
14
9
41
1.78
69445--69635
44
4.3
42
74
11
134
34
15
8
41
1.78
69445--69662
67
3.3
66
77
11
171
33
16
9
41
1.80
69696--69810
22
5.2
21
69
13
70
33
20
8
38
1.83
69823--70055
66
3.5
66
82
7
247
37
18
8
35
1.82
69819--70052
22
10.5
22
73
12
165
36
17
8
36
1.82
71357--71386
12
2.5
12
88
0
51
90
0
10
0
0.47
71408--71478
36
2.0
36
100
0
142
35
16
14
33
1.89
73421--73579
60
2.6
62
73
15
150
40
16
14
27
1.88
73603--73706
31
3.4
31
71
10
97
25
18
18
38
1.93
73607--73775
60
2.8
60
85
4
227
28
15
16
38
1.90
73632--73735
29
3.5
29
67
14
86
27
16
17
38
1.91

Tables:   1

The End!