Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020407.1 Corchorus olitorius cultivar O-4 contig20440, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27374

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--25
2
12.5
2
100
0
50
48
0
0
52
1.00
7713--7761
23
2.2
22
88
3
71
30
8
16
44
1.76
8463--9239
331
2.3
331
82
5
919
37
16
12
32
1.88
9642--9758
37
2.9
41
82
13
152
29
23
9
37
1.86
10912--10983
27
2.7
27
80
4
74
34
22
11
31
1.89
12677--12770
45
2.2
43
86
7
138
37
22
6
34
1.80
13787--14852
343
3.2
331
83
6
1360
37
16
14
32
1.89
19753--21401
331
4.9
332
75
9
1149
33
14
15
36
1.88
21667--21896
69
3.3
69
92
0
379
25
23
29
21
1.99
22824--23718
331
2.7
322
81
6
897
33
13
15
37
1.87
23468--23965
272
1.8
272
80
6
610
34
12
14
38
1.84
24283--24331
25
2.0
25
100
0
98
32
16
18
32
1.93
25162--25539
199
1.9
193
85
9
516
31
20
10
37
1.87

Tables:   1

The End!