Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020410.1 Corchorus olitorius cultivar O-4 contig20443, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51781

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
855--927
24
3.0
25
72
8
69
52
1
4
42
1.29
6071--6104
16
2.1
16
100
0
68
20
5
17
55
1.62
11248--11294
19
2.5
19
89
6
69
63
0
0
36
0.94
11263--11298
10
3.7
10
85
7
56
63
0
0
36
0.94
11260--11298
19
2.1
19
100
0
78
64
0
0
35
0.94
11384--11420
19
2.0
19
89
5
58
64
0
0
35
0.94
14038--14355
22
14.6
22
72
13
183
35
7
17
38
1.79
14038--14332
65
4.5
64
70
13
176
35
7
18
38
1.79
14135--14330
108
1.8
108
83
9
265
33
7
19
39
1.79
14540--14571
2
16.0
2
100
0
64
50
0
0
50
1.00
31471--31512
22
1.9
22
100
0
84
42
26
7
23
1.80
31900--31926
13
2.1
13
100
0
54
40
7
22
29
1.81
32171--32222
22
2.5
22
81
12
56
44
15
0
40
1.46
33798--33844
22
2.1
22
88
0
67
27
14
0
57
1.38
33734--33921
93
2.0
94
88
3
281
34
14
1
50
1.50
51472--51514
22
2.0
22
90
0
68
44
11
0
44
1.40

Tables:   1

The End!