Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020411.1 Corchorus olitorius cultivar O-4 contig20444, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50623

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37--116
31
2.6
32
94
6
146
43
8
5
42
1.57
859--889
16
1.9
16
100
0
62
38
16
12
32
1.86
12528--13006
136
3.5
136
94
0
807
30
13
21
33
1.92
17430--17470
22
1.9
22
90
5
66
9
17
48
24
1.76
20431--20460
15
1.9
16
93
6
53
20
13
10
56
1.65
20478--20529
26
2.0
26
96
0
95
42
21
3
32
1.71
40518--40596
41
1.9
41
94
0
140
35
16
6
41
1.74
43800--43834
16
2.2
16
100
0
70
40
8
14
37
1.76
45111--45226
12
10.2
12
77
17
131
34
42
22
0
1.60
45115--45233
45
2.6
45
98
0
229
36
39
22
0
1.60
45152--45214
33
1.9
32
90
3
99
36
44
19
0
1.51
47431--47459
12
2.4
12
100
0
58
51
20
10
17
1.74

Tables:   1

The End!