Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020413.1 Corchorus olitorius cultivar O-4 contig20446, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2983
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30


Found at i:138 original size:15 final size:15

Alignment explanation


    Indices: 108--149  Score: 66
    Period size: 15  Copynumber: 2.7  Consensus size: 15

         98 TTACTTTGTT

                            
        108 TTGTTTTCTAGTTTAA
          1 TTGTTTTCT-GTTTAA

                           
        124 TTGTTTTCTGTTTAA
          1 TTGTTTTCTGTTTAA

               *       
        139 TTGCTTTCTGT
          1 TTGTTTTCTGT

        150 CAATCTCTGT


Statistics
Matches: 25,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  15   16  0.64
  16    9  0.36

ACGTcount: A:0.12, C:0.10, G:0.14, T:0.64


Consensus pattern (15 bp):   
TTGTTTTCTGTTTAA
Done.