Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020414.1 Corchorus olitorius cultivar O-4 contig20447, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 723

Length: 1206
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40


Found at i:775 original size:15 final size:15

Alignment explanation


    Indices: 745--786  Score: 66
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        735 TTACTCTGCT

                            
        745 TTGTTTTCTAGTTTAA
          1 TTGTTTTCT-GTTTAA

                           
        761 TTGTTTTCTGTTTAA
          1 TTGTTTTCTGTTTAA

               *       
        776 TTGCTTTCTGT
          1 TTGTTTTCTGT

        787 CAATCTCTGT


Statistics
Matches: 25,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  15   16  0.64
  16    9  0.36

ACGTcount: A:0.12, C:0.10, G:0.14, T:0.64


Consensus pattern (15 bp):   
TTGTTTTCTGTTTAA

Found at i:1145 original size:20 final size:20

Alignment explanation


    Indices: 1116--1153  Score: 67
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       1106 GAAAATTTTT

                                
       1116 TTTTTCTTTTCCGTTTTTAA
          1 TTTTTCTTTTCCGTTTTTAA

                 *            
       1136 TTTTTGTTTTCCGTTTTT
          1 TTTTTCTTTTCCGTTTTT

       1154 TCTAAAAAAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  20   17  1.00

ACGTcount: A:0.05, C:0.13, G:0.08, T:0.74


Consensus pattern (20 bp):   
TTTTTCTTTTCCGTTTTTAA
Done.