Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020416.1 Corchorus olitorius cultivar O-4 contig20449, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4614
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33


Found at i:1374 original size:21 final size:21

Alignment explanation


    Indices: 1331--1385  Score: 65
    Period size: 21  Copynumber: 2.6  Consensus size: 21

       1321 CGCCCATTCA

                           **    
       1331 CCGTGCCACCACCGGTTAAGC
          1 CCGTGCCACCACCGGCCAAGC

                              *  
       1352 CCGTGCCACCACCGGCCATGC
          1 CCGTGCCACCACCGGCCAAGC

              *     *    
       1373 CCCTGCCATCACC
          1 CCGTGCCACCACC

       1386 ATTCCAAGCC


Statistics
Matches: 29,  Mismatches: 5, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   29  1.00

ACGTcount: A:0.16, C:0.51, G:0.20, T:0.13


Consensus pattern (21 bp):   
CCGTGCCACCACCGGCCAAGC
Done.