Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020421.1 Corchorus olitorius cultivar O-4 contig20454, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13727
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:13521 original size:2 final size:2

Alignment explanation


    Indices: 13514--13552  Score: 78
    Period size: 2  Copynumber: 19.5  Consensus size: 2

      13504 GTCCAAAATC

                                                                      
      13514 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

      13553 GTGTGTGTGT


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   37  1.00

ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51


Consensus pattern (2 bp):   
TA

Found at i:13557 original size:2 final size:2

Alignment explanation


    Indices: 13552--13629  Score: 149
    Period size: 2  Copynumber: 39.5  Consensus size: 2

      13542 TATATATATA

                                                                          
      13552 TG TG TG TG TG TG TG TG TG T- TG TG TG TG TG TG TG TG TG TG TG
          1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG

                                                                   
      13593 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
          1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T

      13630 ACGTAATACT


Statistics
Matches: 75,  Mismatches: 0, Indels: 2
        0.97            0.00        0.03

Matches are distributed among these distances:
   1    1  0.01
   2   74  0.99

ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51


Consensus pattern (2 bp):   
TG

Done.