Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020430.1 Corchorus olitorius cultivar O-4 contig20463, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 24348
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.30


Found at i:19675 original size:19 final size:18

Alignment explanation


    Indices: 19657--19702  Score: 56
    Period size: 19  Copynumber: 2.5  Consensus size: 18

      19647 AATTTTATTA

                              
      19657 ATTATTAAATAAATAATT
          1 ATTATTAAATAAATAATT

                   ***         
      19675 ATTATTTTTCTAAATAATT
          1 ATTA-TTAAATAAATAATT

                     
      19694 ATTATTAAA
          1 ATTATTAAA

      19703 AATCATCATC


Statistics
Matches: 21,  Mismatches: 6, Indels: 2
        0.72            0.21        0.07

Matches are distributed among these distances:
  18    6  0.29
  19   15  0.71

ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50


Consensus pattern (18 bp):   
ATTATTAAATAAATAATT
Done.