Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020433.1 Corchorus olitorius cultivar O-4 contig20466, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24769

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1508--1545
19
2.0
19
89
0
58
55
2
0
42
1.14
3024--3063
20
2.1
19
86
9
55
67
0
7
25
1.16
4825--4876
24
2.2
24
82
0
59
42
9
15
32
1.79
4837--4886
24
2.1
24
100
0
100
42
8
14
36
1.74
7238--7325
30
2.9
30
93
0
149
37
34
9
19
1.83
7839--7985
18
8.2
18
96
0
114
64
4
0
31
1.12
7843--7995
12
12.8
12
96
0
101
64
3
0
32
1.09
7862--7995
3
45.0
3
98
1
261
66
0
0
33
0.92
10998--11191
96
2.0
94
96
2
352
39
24
10
25
1.87
16253--16381
64
2.0
64
93
0
222
37
17
18
26
1.93
16594--16645
21
2.4
21
84
9
61
3
28
50
17
1.64
16786--16855
22
3.2
23
73
19
69
35
4
1
58
1.26
18179--18328
76
2.0
76
95
0
273
20
19
18
41
1.91
19084--19119
18
2.0
18
100
0
72
66
0
11
22
1.22
20573--20612
21
2.0
21
85
5
55
15
17
2
65
1.39

Tables:   1

The End!