Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020434.1 Corchorus olitorius cultivar O-4 contig20467, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72802

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5809--5848
21
1.9
21
89
0
62
37
17
10
35
1.83
5831--5867
19
1.9
19
88
0
56
32
18
10
37
1.86
7660--7687
2
14.0
2
100
0
56
50
0
0
50
1.00
18714--18955
41
5.9
41
86
4
308
29
14
19
36
1.91
23222--23336
61
1.9
61
94
0
203
35
19
10
34
1.86
25919--25958
20
2.1
18
86
9
53
60
12
5
22
1.52
26357--26395
19
2.1
19
100
0
78
25
5
20
48
1.70
28876--28902
6
4.5
6
100
0
54
51
14
0
33
1.43
32447--32472
10
2.6
10
100
0
52
38
0
0
61
0.96
43765--43951
93
2.0
93
97
0
356
22
25
17
34
1.96
52382--52412
16
1.9
16
93
0
53
48
3
6
41
1.45
53057--53098
18
2.3
19
87
8
68
28
7
28
35
1.84
53121--53181
32
1.9
32
93
0
104
13
8
18
60
1.56
55436--55474
20
2.0
20
84
0
51
15
10
15
58
1.62
58995--59033
18
2.0
20
85
9
55
23
15
33
28
1.95
65230--65294
27
2.4
27
84
5
78
41
24
13
20
1.88
66880--66913
14
2.4
14
95
0
59
23
8
0
67
1.18
66940--66971
15
2.2
15
94
5
57
18
6
15
59
1.57
67747--67830
40
2.1
40
97
0
159
40
19
10
29
1.85

Tables:   1

The End!