Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020436.1 Corchorus olitorius cultivar O-4 contig20469, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8992
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29


Found at i:4827 original size:13 final size:13

Alignment explanation


    Indices: 4809--4833  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       4799 TTTTTACCAC

                         
       4809 CTTAAAATTATTG
          1 CTTAAAATTATTG

                        
       4822 CTTAAAATTATT
          1 CTTAAAATTATT

       4834 TTTTGGCAAA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.40, C:0.08, G:0.04, T:0.48


Consensus pattern (13 bp):   
CTTAAAATTATTG
Done.