Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01020441.1 Corchorus olitorius cultivar O-4 contig20474, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14658
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Found at i:3818 original size:6 final size:6
Alignment explanation
Indices: 3807--3845 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 6
3797 AAGTTAAGAA
3807 AAAAAC AAAAAC AAAAAC AAAATAC -AAAAC -AAAAC AAAA
1 AAAAAC AAAAAC AAAAAC AAAA-AC AAAAAC AAAAAC AAAA
3846 CTAAAGAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 7 0.23
6 22 0.71
7 2 0.06
ACGTcount: A:0.82, C:0.15, G:0.00, T:0.03
Consensus pattern (6 bp):
AAAAAC
Found at i:4740 original size:21 final size:21
Alignment explanation
Indices: 4705--4745 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
4695 CGTTTAAAAG
4705 CAAAAGCCAAAAATTGGAATTT
1 CAAAAGCCAAAAATT-GAATTT
*
4727 CAAAATCC-AAAATTGAATT
1 CAAAAGCCAAAAATTGAATT
4746 CCATCCTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 6 0.33
22 7 0.39
ACGTcount: A:0.51, C:0.15, G:0.10, T:0.24
Consensus pattern (21 bp):
CAAAAGCCAAAAATTGAATTT
Found at i:5416 original size:25 final size:25
Alignment explanation
Indices: 5382--5430 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
5372 CCAAACAATC
*
5382 TTGAGCACTCTCT-CTCTGTCTCTAT
1 TTGAGCACTCT-TGCTCGGTCTCTAT
5407 TTGAGCACTCTTGCTCGGTCTCTA
1 TTGAGCACTCTTGCTCGGTCTCTA
5431 CAAACTAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 1 0.05
25 21 0.95
ACGTcount: A:0.12, C:0.31, G:0.16, T:0.41
Consensus pattern (25 bp):
TTGAGCACTCTTGCTCGGTCTCTAT
Found at i:5466 original size:22 final size:20
Alignment explanation
Indices: 5427--5468 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
5417 TTGCTCGGTC
*
5427 TCTACAAACTAAAAATCACA
1 TCTACAAACCAAAAATCACA
5447 TCTACCAAACCAAACAATCACA
1 TCTA-CAAACCAAA-AATCACA
5469 CACACCCATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 4 0.21
21 8 0.42
22 7 0.37
ACGTcount: A:0.52, C:0.31, G:0.00, T:0.17
Consensus pattern (20 bp):
TCTACAAACCAAAAATCACA
Found at i:6301 original size:25 final size:25
Alignment explanation
Indices: 6267--6315 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
6257 CCAAACAATC
6267 TTGAGCACTCTCACTCGGTCTCTAT
1 TTGAGCACTCTCACTCGGTCTCTAT
*
6292 TTGAGCACTCTCGCTCGGTCTCTA
1 TTGAGCACTCTCACTCGGTCTCTA
6316 CAAACTAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.14, C:0.33, G:0.18, T:0.35
Consensus pattern (25 bp):
TTGAGCACTCTCACTCGGTCTCTAT
Found at i:6350 original size:22 final size:20
Alignment explanation
Indices: 6312--6353 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
6302 TCGCTCGGTC
*
6312 TCTACAAACTAACAATCACA
1 TCTACAAACCAACAATCACA
6332 TCTACCAAACCAAGCAATCACA
1 TCTA-CAAACCAA-CAATCACA
6354 CACACCCATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 4 0.21
21 7 0.37
22 8 0.42
ACGTcount: A:0.48, C:0.33, G:0.02, T:0.17
Consensus pattern (20 bp):
TCTACAAACCAACAATCACA
Found at i:7215 original size:25 final size:25
Alignment explanation
Indices: 7181--7229 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
7171 CCAAACAATC
7181 TTGAGCACTCTCGCTCGGTCTCTAT
1 TTGAGCACTCTCGCTCGGTCTCTAT
*
7206 TTGAGCACTCTCGCTTGGTCTCTA
1 TTGAGCACTCTCGCTCGGTCTCTA
7230 CAAACTAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.12, C:0.31, G:0.20, T:0.37
Consensus pattern (25 bp):
TTGAGCACTCTCGCTCGGTCTCTAT
Found at i:7500 original size:914 final size:902
Alignment explanation
Indices: 5185--7528 Score: 4008
Period size: 914 Copynumber: 2.6 Consensus size: 902
5175 GTGCCTAACA
* *
5185 GGAAGCAACT-AAACAATAAATCATCCATACAAGACAAAAAAAATTTACCTGGTTCGGCACTGAA
1 GGAAGCAACTAAAACAATAAATCATCCACACAAGAC-AAAAAAATTTACATGGTTCGGCACTGAA
*
5249 CTTGCCTACGTCCACGAAGGAGAAGAGAAATCCACTAGTTATAGAAAATTACATCAACACATAAT
65 CTTGCCTACGTCCACG-AGGAGAAGAGAAGTCCACTAGTTATAGAAAATTACATCAACACATAAT
5314 TATCAATAACTCTCACTCAATCTCTCAACCCAATCTAACAATCAATCCTAAACCAAACCCAAACA
129 TATCAATAACTCTCACTCAATCTCTCAACCCAATCTAACAATCAATCCTAAACCAAACCCAAACA
* * * *
5379 ATCTTGAGCACTCTCTCTCTGTCTCTATTTGAGCACTCTTGCTCGGTCTCTACAAACTAAAAATC
194 ATCTTGAGCACTCTCACTCGGTCTCTATTTGAGCACTCTCGCTCGGTCTCTACAAACTAACAATC
* **
5444 ACATCTACCAAACCAAACAATCACACACACCCATGAGGAGCATCCTTTTGTCCTATCAGGTGTCT
259 ACATCTACCAAACCAAACAATCACACACACCCATGAGGACCATCCTTTTGTCCTATGGGGTGTCT
*
5509 CCACGAAAATCTAACCCTTAGACTACATCTTTTCTCCAAACATACAAAATCCTATAGAGAAACTC
324 CCACCAAAATCTAACCCTTAGACTACATCTTTTCTCCAAACATACAAAATCCTATAGAGAAACTC
* * * *
5574 TCTATTTATAGTAGAACAAACTTGGCCTCCAAGAATCCCTTTCCTACAAGGATTCTTGTTTACCA
389 TCTATTTATACTAGAACAAACTTAGCCTCCAAGAATCCCTTTCTTACTAGGATTCTTGTTTACCA
*
5639 AGTCTTTTTGTCCACCAAACAATAGGTCAAAAAAAAATCCCAAACCAAATCTAACTAGGATTTGA
454 AGTCTTTTTGTCCACCAAACAATAGGT-AAAAAAAAATCCCAATCCAAATCTAACTAGGATTTGA
5704 GTCAAAATCCTAACAATCTCCACCTTGACTCAAATTCCACCAAATCTTCAATCTTCAAGGACATG
518 GTCAAAATCCTAACAATCTCCACCTTGACTCAAATTCCACCAAATCTTCAATCTTCAAGGACATG
*
5769 CTTGGCTCCACTTACGATGAAAGTCTCACAATCTTCAAGCAATCTTCTCTTGTGTGTCTTCATCT
583 CTTGGCTCCACCTACGATGAAAGTCTCACAATCTTCAAGCAATCTTCTCTTGTGTGTCTTCATCT
*
5834 TCACTGCATCATCTTCAGCTTTAATTCCGAATCCAATCTTGCTTTTCATCCAAATCTGATTTGAA
648 TCACTGCATCATCTTCAACTTTAATTCCGAATCCAATCTTGCTTTTCATCCAAATCTGATTTGAA
5899 AAGTCAACATGCAATCTTCAAAATAATCATCAAGCAACAAAATTTGGCAATCTCCACGACAACAA
713 AAGTCAACATGCAATCTTCAAAATAATCATCAAGCAACAAAATTTGGCAATCTCCACGACAACAA
5964 ATCTGACGAACCATATCACAAGTTTGGACTACCGAGCAACCTCCAATCCATTCAAACTGAGCTCG
778 ATCTGACGAACCATATCACAAGTTTGGACTACCGAGCAACCTCCAATCCATTCAAACTGAGCTCG
* *
6029 GATACCAATTGTTGTAACCCGGATATCCCAAACTATATCTATCAAATTAATCATGCAAGC
843 GATACCAATTGTTGTAACCCAGATATCCCAAAATATATCTATCAAATTAATCATGCAAGC
**
6089 GGAAGCAACTAAAACAATAAATCATCCACACAAGACAAAAAACATTTATGTGGTTCGGCACTGAA
1 GGAAGCAACTAAAACAATAAATCATCCACACAAGACAAAAAA-ATTTACATGGTTCGGCACTGAA
6154 CTTG-C--C-T--AC-------------GTCCACTAGTTATAGAAAATTACATCAACACATAATT
65 CTTGCCTACGTCCACGAGGAGAAGAGAAGTCCACTAGTTATAGAAAATTACATCAACACATAATT
* ** *
6200 ATCAATAACTCTCACTCATTCTCTCAATTCAATTTAACAATCAATCCTAAACCAAACCCAAACAA
130 ATCAATAACTCTCACTCAATCTCTCAACCCAATCTAACAATCAATCCTAAACCAAACCCAAACAA
6265 TCTTGAGCACTCTCACTCGGTCTCTATTTGAGCACTCTCGCTCGGTCTCTACAAACTAACAATCA
195 TCTTGAGCACTCTCACTCGGTCTCTATTTGAGCACTCTCGCTCGGTCTCTACAAACTAACAATCA
*
6330 CATCTACCAAACCAAGCAATCACACACACCCATGAGGACCATCCTTTTGTCCTATGGGGTGTCTC
260 CATCTACCAAACCAAACAATCACACACACCCATGAGGACCATCCTTTTGTCCTATGGGGTGTCTC
*
6395 CACCAAAATCTAACCCTTAAACTACATCTTTTCTCCAAACATACAAAATCCTATAGAGAAACTCT
325 CACCAAAATCTAACCCTTAGACTACATCTTTTCTCCAAACATACAAAATCCTATAGAGAAACTCT
6460 CTATTTATACTAGAACAAACTTAGCCTCCAAGAATCCCTTTCTTACTAGGATTCTTGTTTACCAA
390 CTATTTATACTAGAACAAACTTAGCCTCCAAGAATCCCTTTCTTACTAGGATTCTTGTTTACCAA
6525 GTCTTTTTGTCCACCAAACAATAGGTAAAAAAAAATCCCAATCCAAATCTAACTAGGATTTGAGT
455 GTCTTTTTGTCCACCAAACAATAGGTAAAAAAAAATCCCAATCCAAATCTAACTAGGATTTGAGT
6590 CAAAATCCTAACAATCTCCACCTTGACTCAAATTCCACCAAATCTTCAATCTTCAATCAATCTTC
520 CAAAATCCTAACAATCTCCACCTTGACTCAAATTCCACC--A-----AATC-T---TCAATCTTC
*
6655 AAGGACATGCTTGGCTCCACCTATGATGAAAGTCTCACAATCTTCAAGCAATCTTCTCTTGTGTG
574 AAGGACATGCTTGGCTCCACCTACGATGAAAGTCTCACAATCTTCAAGCAATCTTCTCTTGTGTG
* *
6720 TCTTCATCTTCACTGCATTATCTTCAACTTTAATTCCGAATCCAATCTTGCTTTTCATCCAAATT
639 TCTTCATCTTCACTGCATCATCTTCAACTTTAATTCCGAATCCAATCTTGCTTTTCATCCAAATC
* *
6785 TGATTTGAGAAGTCAACATGCAATCTTCAAAATAATCATCAAGCAACGAAATTTGGCAATCTCCA
704 TGATTTGAAAAGTCAACATGCAATCTTCAAAATAATCATCAAGCAACAAAATTTGGCAATCTCCA
* *
6850 CGACAACAAATCTGACGAACCATATCACAAGTTTGGACTACCGGGCAACCTCCAATCCATTCAAC
769 CGACAACAAATCTGACGAACCATATCACAAGTTTGGACTACCGAGCAACCTCCAATCCATTCAAA
6915 CTGAGCTCGGATACCAATTGTTGTAACCCAGATATCCCAAAATATATCTATCAAATTAATCATGC
834 CTGAGCTCGGATACCAATTGTTGTAACCCAGATATCCCAAAATATATCTATCAAATTAATCATGC
6980 AAGC
899 AAGC
6984 GGAAGCAACTAAAACAATAAATCATCCACACAAGACAAAAAAATTTACATGGTTCGGCACTGAAC
1 GGAAGCAACTAAAACAATAAATCATCCACACAAGACAAAAAAATTTACATGGTTCGGCACTGAAC
7049 TTGCCTACGTCCACGGAGGAGAAGAGAAGTCCACTAGTTATAGAAAATTACATCAACACATAATT
66 TTGCCTACGTCCAC-GAGGAGAAGAGAAGTCCACTAGTTATAGAAAATTACATCAACACATAATT
*
7114 ATCAATAAGTCTCACTCAATCTCTCAACCCAATCTAACAATCAATCCTAAACCAAACCCAAACAA
130 ATCAATAACTCTCACTCAATCTCTCAACCCAATCTAACAATCAATCCTAAACCAAACCCAAACAA
* *
7179 TCTTGAGCACTCTCGCTCGGTCTCTATTTGAGCACTCTCGCTTGGTCTCTACAAACTAACAATCA
195 TCTTGAGCACTCTCACTCGGTCTCTATTTGAGCACTCTCGCTCGGTCTCTACAAACTAACAATCA
*
7244 CATCTACCAAACCAAACAATCACACATACCCATGAGGACCATCCTTTTGTCCTATGGGGTGTCTC
260 CATCTACCAAACCAAACAATCACACACACCCATGAGGACCATCCTTTTGTCCTATGGGGTGTCTC
* *
7309 CACCAAAACCTCACCCTTAGACTACATCTTTTCTCCAAACATACAAAATCCTATAGAGAAACTCT
325 CACCAAAATCTAACCCTTAGACTACATCTTTTCTCCAAACATACAAAATCCTATAGAGAAACTCT
7374 CTATTTATACTAGAACAAACTTAGCCTCCAAGAATCCCTTTCTTACTAGGATTCTTGTTTACCAA
390 CTATTTATACTAGAACAAACTTAGCCTCCAAGAATCCCTTTCTTACTAGGATTCTTGTTTACCAA
7439 GTCTTTTTGTCCACCAAACAATAGGTAAAAAAAAATCCCAATCCAAATCTAACTAGGATTTGAGT
455 GTCTTTTTGTCCACCAAACAATAGGTAAAAAAAAATCCCAATCCAAATCTAACTAGGATTTGAGT
*
7504 CAAAATCCTAATACAATCTACACCT
520 CAAAATCCT-A-ACAATCTCCACCT
7529 GAATCACCTA
Statistics
Matches: 1356, Mismatches: 49, Indels: 58
0.93 0.03 0.04
Matches are distributed among these distances:
884 77 0.06
885 369 0.27
886 1 0.00
891 4 0.00
892 1 0.00
894 24 0.02
895 370 0.27
897 1 0.00
898 1 0.00
899 2 0.00
900 2 0.00
901 1 0.00
902 1 0.00
904 17 0.01
905 48 0.04
914 424 0.31
915 1 0.00
916 12 0.01
ACGTcount: A:0.35, C:0.27, G:0.11, T:0.27
Consensus pattern (902 bp):
GGAAGCAACTAAAACAATAAATCATCCACACAAGACAAAAAAATTTACATGGTTCGGCACTGAAC
TTGCCTACGTCCACGAGGAGAAGAGAAGTCCACTAGTTATAGAAAATTACATCAACACATAATTA
TCAATAACTCTCACTCAATCTCTCAACCCAATCTAACAATCAATCCTAAACCAAACCCAAACAAT
CTTGAGCACTCTCACTCGGTCTCTATTTGAGCACTCTCGCTCGGTCTCTACAAACTAACAATCAC
ATCTACCAAACCAAACAATCACACACACCCATGAGGACCATCCTTTTGTCCTATGGGGTGTCTCC
ACCAAAATCTAACCCTTAGACTACATCTTTTCTCCAAACATACAAAATCCTATAGAGAAACTCTC
TATTTATACTAGAACAAACTTAGCCTCCAAGAATCCCTTTCTTACTAGGATTCTTGTTTACCAAG
TCTTTTTGTCCACCAAACAATAGGTAAAAAAAAATCCCAATCCAAATCTAACTAGGATTTGAGTC
AAAATCCTAACAATCTCCACCTTGACTCAAATTCCACCAAATCTTCAATCTTCAAGGACATGCTT
GGCTCCACCTACGATGAAAGTCTCACAATCTTCAAGCAATCTTCTCTTGTGTGTCTTCATCTTCA
CTGCATCATCTTCAACTTTAATTCCGAATCCAATCTTGCTTTTCATCCAAATCTGATTTGAAAAG
TCAACATGCAATCTTCAAAATAATCATCAAGCAACAAAATTTGGCAATCTCCACGACAACAAATC
TGACGAACCATATCACAAGTTTGGACTACCGAGCAACCTCCAATCCATTCAAACTGAGCTCGGAT
ACCAATTGTTGTAACCCAGATATCCCAAAATATATCTATCAAATTAATCATGCAAGC
Found at i:11910 original size:154 final size:153
Alignment explanation
Indices: 11631--14655 Score: 4218
Period size: 154 Copynumber: 19.6 Consensus size: 153
11621 TTTAATTGTT
* * *
11631 GTTAGGCCATAAACAATGGAAAGAAAAAGCATCGAGGGTTGCCAAATCGAAGACTATTCAAAACG
1 GTTAGGCCATAAACAATGGAAAG-AAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-
* * * *
11696 GAACTAATGGGCACCGAAAGGCCTAAAATAACAAGTGTTCCAAATGAACTAAAAACTTCACAGTG
64 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
* *
11761 GACTAATCTCAGCAAAATGATTATT
129 GACTAATCTCACCAAAATGATTATA
* * ** * *
11786 GTTAGGCCATAAACAATGGAAAGAAAAGCATAGTGGGCTGCCAAATCGAAGGCGATTTAAAACAG
1 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-G
* * * * * * *
11851 AAATAATCGGCCCCGAAAGTCCTAAAGTAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGT
65 AACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGG
* * * *
11916 TCTAATCTCGCCGAAATGATTACA
130 ACTAATCTCACCAAAATGATTATA
11940 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTT-CTCAAATCGAAGACGATTCAAAACG
1 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGC-CAAATCGAAGACGATTCAAAACG
12004 ACACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
65 A-ACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
12069 GACTAATCTCACCAAAATGATTATA
129 GACTAATCTCACCAAAATGATTATA
* * * * *
12094 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGATTTCCCAAATCAAAGACGATTGAGAACGA
1 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGA
* * *
12159 CACTAATGGGCCCCGAAAGGGCCAAAATAACAAGTGTTTCAAATGAGCTAAAAACTTCACAGTGG
66 -ACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGG
12224 ACTAATCTCACCAAAATGATTATA
130 ACTAATCTCACCAAAATGATTATA
** * *
12248 GTTAGGCCATAAACAATGGAAAGAAAAGCATCAAGGGTTGCCAAATC-AATGACTATTCAAAACG
1 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAA-GACGATTCAAAACG
* * ** * *
12312 TCACTAATGGGGCTTGCTAGGCCCAAAATAGCAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
65 -AACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
** * *
12377 TTCTAATCTCACCGAAATGATTACA
129 GACTAATCTCACCAAAATGATTATA
* * *
12402 GTTAGGCCATAAACAATGGAAAGAAAAACATTGAGGTTTACCAAATCGAAGACGATTTAAAACGT
1 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACG-
* ** * *
12467 CACTAATGGGCCTTGATAGGCACAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGT
65 AACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGG
* * *
12532 TCTAATCTCACCGAAATGATTACA
130 ACTAATCTCACCAAAATGATTATA
12556 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGAC-AGTTCAAAACG
1 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGA-TTCAAAAC-
* *
12620 GAACTAATGGGCCCCGATAGGCCCATAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAATG
64 GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
*
12685 GACTAATCTCACCAAAGTGATTATA
129 GACTAATCTCACCAAAATGATTATA
* *
12710 GTTAGGCCATAAACAATGGAAAGAAAAGCATTAAGGGTTGCCAAATCGAAGACGATTCAAAACGG
1 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-G
* * *
12775 AACTAATGGGCCCCGATAGGTCCAAAATATCAAGTGTTCCAAATGAGCTAAAAACTTCACAATGG
65 AACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGG
12840 ACTAATCTCACCAAAATGATTTATA
130 ACTAATCTCACCAAAATGA-TTATA
* * * *
12865 GTTAGACCATAAACAATGGAACGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTTAAAACGT
1 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACG-
* * * *
12930 CAA-TAATGGG----AATAGGACCAAAATAAAAAGTGTTCCTAATGAGCTAAAAACTTCACAGTG
65 -AACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
* *
12990 GACTAGTCTCACCAAAATGATTTTA
129 GACTAATCTCACCAAAATGATTATA
* *
13015 GTTAGGCCATAAACAAAT-GAAAGAAAAGCATTGGGGATTGCCAAATCGAAGACGATTCAAAACG
1 GTTAGGCCATAAAC-AATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACG
* *
13079 TCACTAATTGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
65 -AACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG
13144 GACTAATCTCACCAAAATGATTATA
129 GACTAATCTCACCAAAATGATTATA
**
13169 GTTAAACCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGG
1 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-G
** * * * * *
13234 AACTAATGGGCCTTGATAGGCTCAAAATAACAAGTATTCAAAATGATCTAAAAACTTCAAAGTGG
65 AACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGG
* *
13299 ACTAATCTAAACAAAATGATTATA
130 ACTAATCTCACCAAAATGATTATA
* * * * * *
13323 GGTAGGCCATAAACAATGGAAACAAAAGCATTGAGGCTTGCCAATTCGAAGAAGATTCAATACGT
1 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACG-
* * *
13388 CACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATTAGCTAAAAAGTTCACAGTGG
65 AACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGG
* *
13453 ACTAATC-AATTCAAAATGATTATA
130 ACTAATCTCA-CCAAAATGATTATA
*
13477 GTTAGACCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACAG
1 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-G
* * *
13542 AACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAACTAAAAAGTTTACAGTGG
65 AACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGG
*
13607 ACTAATCTCACCAAAATGACTATA
130 ACTAATCTCACCAAAATGATTATA
* * *
13631 GTTAGACCATAAACAATGGAAAGAAAAGCGTTGAGGTTTGCCAAATCGAAGACGATTCTAAACAG
1 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-G
* * *
13696 AACTAATGGGCCCCGATAGGCCGAAAATAACAAGTGTTCCAACTGAGCTAAAAAGTTCACAGTGG
65 AACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGG
* *
13761 ACTAATTTCACCAAAATGGTTATA
130 ACTAATCTCACCAAAATGATTATA
* * *
13785 GTTAAGTCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGGCGATTCAAAACGG
1 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-G
* *
13850 AACTAATGAGCCCCGATAGGCCCAAAATAACAAGTGTTCCGAATGAGCTAAAAACTTCACAGTGG
65 AACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGG
13915 ACTAATCTCACCAAAATGATTATA
130 ACTAATCTCACCAAAATGATTATA
** *
13939 GTTAGGTGATAAACAATGGAAAGAAAAGCATTGAGGTTTACCAAATCGAAGACGATTCAAAACGA
1 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGA
** *
14004 CACTAATGGGCCTTGATAGGCCCAAAATAACAAGTGTTTCAAATGAGCTAAAAACTTCACAGTGG
66 -ACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGG
14069 ACTAATCTCACCAAAATGATTATA
130 ACTAATCTCACCAAAATGATTATA
** * *
14093 GTTAGGCCATAAACAATGGAAAGAAAAGCATCAAGGGTTGCCAAATCGATGACGATTCAAAACGT
1 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACG-
* * ** *
14158 CACTAATGGGTCTTGCTAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAATCTTCACAGTG
65 AACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAA-CTTCACAGTG
** * *
14223 TTCTAATCTCACCGAAATGATTACA
129 GACTAATCTCACCAAAATGATTATA
* * *
14248 GTTAGGCCATAAACAATGGAAAGAAAAACATTGAGGTTTACCAAATCGAAGACGATTTAAAACGT
1 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACG-
* ** ** *
14313 CACTAATGGGCCTTGATAGG-CCAAAATAACAAGTACTCCAAATGAGCTAAAAACTTCACAGTTG
65 AACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGG
14377 ACTAATCTCACCAAAATGATTATA
130 ACTAATCTCACCAAAATGATTATA
* *
14401 GTTAGGCCATAAACAATGGAAAGAAAATCATTGAGGTTTGCCAAATCGAAGACGATCCAAAACGT
1 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACG-
* * * ** *
14466 CACTAATGGGCCCCAATAGGCCCAAAATAACAAGTACTTCCAAATTTGCTAAAAAGTTCACAGTG
65 AACTAATGGGCCCCGATAGGCCCAAAATAACAAGT-GTTCCAAATGAGCTAAAAACTTCACAGTG
14531 GACTAATCTCACCGAAAATGATTATA
129 GACTAATCTCACC-AAAATGATTATA
* * * *
14557 GTTAGGCCATAAACAATAGAAAGAAATGAATTGAGGTTTGCCAAATCGAAGACGATTCAATACGT
1 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACG-
* *
14622 CACTAATGGGCCCTGATAGGCCCAAAAATAACAA
65 AACTAATGGGCCCCGATAGGCCC-AAAATAACAA
14656 TTA
Statistics
Matches: 2585, Mismatches: 254, Indels: 60
0.89 0.09 0.02
Matches are distributed among these distances:
149 1 0.00
150 65 0.03
151 66 0.03
153 122 0.05
154 1982 0.77
155 245 0.09
156 94 0.04
157 10 0.00
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (153 bp):
GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGA
ACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGA
CTAATCTCACCAAAATGATTATA
Done.