Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020445.1 Corchorus olitorius cultivar O-4 contig20478, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60717

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
261--310
17
3.0
16
85
8
64
22
22
22
34
1.97
3229--4268
438
2.3
435
83
6
1241
31
13
13
42
1.83
4595--4621
3
9.0
3
100
0
54
33
33
33
0
1.58
4669--4702
3
11.3
3
93
0
59
32
0
2
64
1.08
9957--9983
3
9.0
3
100
0
54
0
33
0
66
0.92
29626--29667
17
2.6
16
85
10
59
50
0
2
47
1.14
35295--35401
18
5.6
18
68
20
65
32
14
20
31
1.93
35293--35391
21
5.0
21
67
21
70
30
14
23
32
1.94
35293--35406
39
2.9
39
94
0
192
30
14
21
32
1.94
45154--45191
11
3.5
11
85
10
51
57
2
0
39
1.12
45809--45838
15
2.0
15
100
0
60
0
20
33
46
1.51

Tables:   1

The End!