Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020447.1 Corchorus olitorius cultivar O-4 contig20480, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56553

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2382--2412
2
15.5
2
93
0
53
48
0
3
48
1.17
3134--3302
92
1.8
93
90
1
277
51
2
14
31
1.55
3338--3399
31
2.0
31
93
0
106
40
8
24
27
1.83
4773--5268
166
2.9
165
84
5
645
29
14
17
38
1.90
8433--8459
14
1.9
14
100
0
54
88
7
3
0
0.61
11718--11755
20
1.9
20
100
0
76
15
10
10
63
1.52
14670--14716
19
2.5
19
82
0
58
65
4
4
25
1.29
15036--15085
25
2.0
25
84
7
66
20
20
2
58
1.50
23381--23418
12
3.2
12
81
11
51
71
0
2
26
1.00
23372--23416
24
1.9
23
86
13
65
68
2
2
26
1.12
23374--23418
20
2.3
19
81
7
54
71
2
2
24
1.09
24129--24159
7
4.4
7
95
0
53
58
9
29
3
1.46
28781--28870
6
15.0
6
86
4
83
40
33
18
7
1.80
28784--28866
12
6.9
12
83
0
94
38
33
19
8
1.82
28775--28866
24
3.8
24
85
0
112
40
33
18
7
1.79
28784--28866
30
2.8
30
90
0
130
38
33
19
8
1.82
32764--32791
1
28.0
1
100
0
56
0
0
0
100
0.00
40823--40857
6
5.8
6
96
0
61
28
0
37
34
1.58
42452--42490
17
2.3
17
86
0
51
25
0
2
71
0.98
43815--43841
12
2.2
12
100
0
54
55
0
0
44
0.99
43910--44368
178
2.6
178
81
4
514
33
14
15
36
1.88
46655--46785
22
6.0
22
73
8
106
38
16
9
35
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46885--46933
25
1.9
26
87
4
73
26
32
10
30
1.89
47027--47125
44
2.2
44
82
3
110
36
16
10
37
1.82
46830--47126
22
13.3
22
67
16
96
34
17
9
38
1.83
47442--47533
2
46.0
2
97
0
175
50
48
0
1
1.08
48486--48520
16
2.2
16
100
0
70
57
20
22
0
1.41
55317--55341
13
1.9
13
100
0
50
16
8
20
56
1.65

Tables:   1

The End!