Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020448.1 Corchorus olitorius cultivar O-4 contig20481, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30380

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
609--661
5
10.8
5
81
18
51
43
13
0
43
1.43
607--661
27
2.2
24
90
9
83
43
12
0
43
1.42
1141--1179
13
2.7
15
80
15
55
38
23
7
30
1.83
8862--8893
12
2.7
12
95
0
55
0
18
31
50
1.48
9453--9497
21
2.4
19
85
14
58
46
26
17
8
1.78
15609--15739
35
3.7
35
88
5
176
12
36
38
12
1.80
26079--26138
24
2.5
24
81
2
77
40
10
10
40
1.72
26098--26599
250
2.0
250
96
0
934
40
15
11
32
1.83
30064--30292
113
2.0
114
98
0
442
37
17
14
30
1.90

Tables:   1

The End!