Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020450.1 Corchorus olitorius cultivar O-4 contig20483, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 939

Length: 1566
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.31


Found at i:1491 original size:29 final size:28

Alignment explanation


    Indices: 1447--1502  Score: 94
    Period size: 29  Copynumber: 2.0  Consensus size: 28

       1437 TTCTTCAAAC

                                *       
       1447 TTTCTAATTTCAAGAACGCTCAAGAACA
          1 TTTCTAATTTCAAGAACGCTAAAGAACA

                                        
       1475 TTTCTAATCTTCAAGAACGCTAAAGAAC
          1 TTTCTAAT-TTCAAGAACGCTAAAGAAC

       1503 GTGGAATAAC


Statistics
Matches: 26,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  28    8  0.31
  29   18  0.69

ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29


Consensus pattern (28 bp):   
TTTCTAATTTCAAGAACGCTAAAGAACA
Done.