Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020452.1 Corchorus olitorius cultivar O-4 contig20485, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80337

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3490--3514
3
8.3
3
100
0
50
0
32
0
68
0.90
4866--4896
9
3.4
9
95
0
53
25
70
0
3
1.02
4847--4871
1
25.0
1
100
0
50
0
100
0
0
0.00
17582--17953
185
2.0
185
98
0
726
30
16
18
34
1.93
20812--20898
45
2.0
43
90
4
138
35
10
24
29
1.88
26988--27097
58
1.9
58
85
7
152
33
12
18
35
1.88
28940--29339
204
2.0
203
93
2
687
44
8
11
36
1.70
30390--30432
22
2.0
22
90
9
70
37
2
23
37
1.68
31045--31082
2
19.0
2
100
0
76
50
0
0
50
1.00
34128--34191
23
2.8
22
80
13
67
34
3
1
60
1.22
34128--34177
24
2.2
21
86
10
64
32
4
0
64
1.12
39037--39084
22
2.2
22
88
3
71
31
14
2
52
1.54
39070--39496
22
19.5
22
67
14
80
36
18
10
34
1.85
39107--39195
45
2.0
45
82
8
110
38
17
12
31
1.87
39289--39358
23
3.1
22
86
10
97
38
21
4
35
1.73
39379--39496
44
2.7
43
79
5
114
33
16
9
40
1.81
39604--39683
22
3.6
22
77
3
81
33
17
8
40
1.81
39703--39825
22
5.5
24
76
15
106
34
13
9
42
1.77
39860--40008
22
6.9
21
69
21
85
37
18
7
36
1.79
40065--40115
23
2.3
23
86
10
70
41
17
5
35
1.74
40105--40259
22
7.0
22
72
15
124
36
17
10
35
1.85
40086--40259
66
2.6
65
81
9
201
36
17
10
35
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40413--40441
15
2.0
15
93
6
51
62
0
6
31
1.22
40423--40461
20
2.0
20
85
10
53
64
2
5
28
1.28
40611--40654
21
2.0
22
87
12
65
36
22
15
25
1.94
42415--43683
631
2.0
632
97
1
2380
31
14
20
32
1.93
44487--44556
30
2.4
29
85
2
86
38
25
14
21
1.91
47996--48020
7
3.6
7
100
0
50
44
28
0
28
1.55
48741--48784
19
2.2
20
88
4
63
38
20
2
38
1.65
53570--53611
19
2.2
20
86
4
59
40
19
2
38
1.64
57200--57250
3
17.0
3
100
0
102
33
0
33
33
1.58
59643--59690
3
16.0
3
86
0
69
64
4
0
31
1.12
71700--71751
25
2.1
24
83
16
63
48
1
3
46
1.31
71894--71942
21
2.3
21
92
0
80
34
20
8
36
1.82
72322--72361
21
2.1
19
86
13
55
20
27
15
37
1.92
80142--80277
68
2.0
68
98
0
263
37
23
16
22
1.94

Tables:   1

The End!