Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020455.1 Corchorus olitorius cultivar O-4 contig20488, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4024
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.31


Found at i:1591 original size:15 final size:15

Alignment explanation


    Indices: 1571--1601  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       1561 CATATTTCGT

                           
       1571 CGTATATATCATCCC
          1 CGTATATATCATCCC

                           
       1586 CGTATATATCATCCC
          1 CGTATATATCATCCC

             
       1601 C
          1 C

       1602 AACATCATCA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.26, C:0.35, G:0.06, T:0.32


Consensus pattern (15 bp):   
CGTATATATCATCCC
Done.