Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020456.1 Corchorus olitorius cultivar O-4 contig20489, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1692
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36


Found at i:1114 original size:1 final size:1

Alignment explanation


    Indices: 1108--1134  Score: 54
    Period size: 1  Copynumber: 27.0  Consensus size: 1

       1098 AGACGGTTAG

                                       
       1108 TTTTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTTT

       1135 ATAACTGCAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   26  1.00

ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00


Consensus pattern (1 bp):   
T

Done.