genome.fa.s20458.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020458.1 Corchorus olitorius cultivar O-4 contig20491, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30705

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
700--1169	238	2.0	231	90	3	694	45	14	14	24	1.83
1195--1245	21	2.5	21	78	15	54	64	3	0	31	1.11
3264--3413	22	6.8	21	75	11	113	38	18	13	30	1.89
3264--3413	44	3.4	44	78	9	144	38	18	13	30	1.89
3265--3413	66	2.2	66	80	3	156	38	18	12	30	1.88
3264--3489	22	10.3	22	72	7	93	38	18	11	31	1.87
3530--3617	22	4.0	22	75	10	81	27	23	7	40	1.82
3677--3830	22	7.0	22	70	12	84	33	10	13	42	1.78
3648--3830	44	4.2	44	77	4	154	34	10	12	42	1.76
3648--3830	66	2.8	64	73	9	152	34	10	12	42	1.76
5749--5981	65	3.6	65	82	6	274	29	19	16	35	1.93
5749--6066	22	14.5	22	77	9	285	33	18	14	33	1.91
5750--6297	22	24.8	22	71	13	186	32	17	13	36	1.88
6281--6363	22	3.8	21	71	7	58	39	7	13	39	1.72
6199--6381	44	4.2	44	77	6	165	36	10	11	40	1.77
8886--9529	322	2.0	322	97	0	1209	45	8	8	38	1.65
12109--12202	45	2.2	43	86	7	129	39	20	5	35	1.75
13301--13396	45	2.2	43	83	7	115	41	21	2	34	1.65
15402--15487	42	2.0	42	88	4	129	47	3	31	17	1.64
20967--21033	21	3.1	21	76	2	71	13	20	46	19	1.83
21245--21299	21	2.6	21	82	0	65	12	27	50	9	1.70
24205--24284	33	2.4	34	82	16	105	52	10	8	28	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25579--25622	22	2.0	22	82	8	54	4	36	4	54	1.41
28025--28082	10	6.4	9	74	21	50	10	10	3	75	1.15
28031--28068	16	2.3	17	86	4	51	7	7	2	81	0.96
29208--29248	21	1.9	22	85	5	57	39	14	29	17	1.89

Tables:   1

The End!