Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002046.1 Corchorus olitorius cultivar O-4 contig02046, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 641

Length: 1069
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36


Found at i:221 original size:33 final size:33

Alignment explanation


    Indices: 120--224  Score: 122
    Period size: 33  Copynumber: 3.2  Consensus size: 33

        110 TTGCAAAGAG

                    *       *       *      * 
        120 TGTTTTAGATGTTGTTAGTGATGATACTAAACC
          1 TGTTTTAGGTGTTGTTTGTGATGAAACTAAATC

             **    *                *        
        153 TAATTTAAGTGTTGTTTGTGATGACACTAAATC
          1 TGTTTTAGGTGTTGTTTGTGATGAAACTAAATC

                                              
        186 TGTTTTAGGTGTTGTTTGTGATGAAAC-AAATTC
          1 TGTTTTAGGTGTTGTTTGTGATGAAACTAAA-TC

                  
        219 TGTTTT
          1 TGTTTT

        225 GGATGCTAAT


Statistics
Matches: 60,  Mismatches: 11, Indels: 2
        0.82            0.15        0.03

Matches are distributed among these distances:
  32    3  0.05
  33   57  0.95

ACGTcount: A:0.26, C:0.08, G:0.21, T:0.46


Consensus pattern (33 bp):   
TGTTTTAGGTGTTGTTTGTGATGAAACTAAATC
Done.